<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26297

Description Uncharacterized protein
SequenceMGDGTTATSNRGGGGNGGSGSNKPAWLQQYDLIGKIGEGTYGLVFLARTKSPSNRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREISHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKVTNPIHPYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGDEQGVVKIADFGLARIYQAPLKPLSDNGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEVKATPNPFQLDQLDKIFRVLGHPTQEKWPTLVNLPHWQSDVQHIQGHKYENPGLYSVVHLPLKSAAYDLLSKMLEYDPRKRITAAQALDHEYFRSEPLPGRNALVPSQAGAEKVMNYPTRPVDTTTDFEGTNSLQTSQPVSSGNAVSGSMAAGHVVPNRSVPRPMPVVGMQRIQAQGMSAYNLTSQAAMGGGMNPGSIPMQRGVAAQAHQQQMRRKDPGMGMPGYPPQQKSRRF
Length481
PositionKinase
OrganismVitis vinifera (Grape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> Vitales> Vitaceae> Viteae> Vitis.
Aromaticity0.07
Grand average of hydropathy-0.392
Instability index37.69
Isoelectric point9.36
Molecular weight53063.01
Publications
PubMed=17721507

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
cyclin-dependent protein serine/threonine kinase activity	GO:0004693	IBA:GO_Central
RNA polymerase II CTD heptapeptide repeat kinase activity	GO:0008353	IBA:GO_Central

GO - Biological Process
protein phosphorylation	GO:0006468	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26297
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     171.67|      40|      42|     389|     428|       1
---------------------------------------------------------------------------
  349-  385 (36.31/16.34)	..NALVPSQAGAEKVMNyptRPVDTTTDFEGTNSLQ.TSQ....
  389-  428 (69.90/37.55)	SGNAVSGSMAAGHVVPN...RSVPRPMPVVGMQRIQ.AQGMSAY
  432-  472 (65.45/34.74)	SQAAMGGGMNPGSIPMQ...RGVAAQAHQQQMRRKDpGMGMPGY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.08|      28|      42|     168|     197|       2
---------------------------------------------------------------------------
  168-  197 (43.85/36.94)	LVMGEGDEQGVVKIADFGLarIYQA..PLKPL
  213-  242 (45.23/31.19)	LLLGAKHYTSAVDMWAVGC..IFAEllTLKPL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26297 with CDK8 domain of Kingdom Viridiplantae
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