<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26296

Description Uncharacterized protein
SequenceMPIYPSRKPNEIILVGLEATGVGVGTHLFSTSLRALLSQTTTTPLAVLLVPTAPQSKYLSTTMHANLGDWQEEVYQKIKSMNDMYLPELIQIYKKFAARYQQLVSLPQQPMGDQSRKLKDVMSTLEFLIKFLQVPKSRISLAYKEKLEKVENRIIGILYSNGSRKPDSSVQQEELPMPDMHSLQPVRSQSQTPQVESDLQPMKLQSTVSSMQKNNVDNLHNDLISSLSEVATAQKNIMNPQLSGTKSKSQQLHAVKPLQQDSVGSPHIPVSAPQQSMNDTSLSQNSVNIPQHNTHPLRLNSSRLQQIHLKQQKEQQMADAKQMMKQFQQHETQQQLKKKEDIMQQQQPAQLGVHKMPQNTMNKEDELKVKQALDFAPGVLQHCSASQHLAYNQHQLKSRGSFVSVPQLLQPVSDQIPQSSPQIDQKNILVSSKKTETSLKVVDSLSNVPSPSTPFSQYPMLGDIGGQQATSLMGSATSLVISTPGISSSSLLEEPLQRLIELVKSMSDEALSASINDIESVVNLTDGTAGSLSGNGAGAAIGEDVSATTKVCLEARDFGNQDGTIGKMKVNRCITTAPLRILSGGISDRIKRFTDSETSDMELSVTFRMKKPKLEANHVLLEEIREINQRLVDTVVDLSDEDITENAAIAATEGGEGTIVKCSFSTVVAYSNSKSHQASAKVMPILPLHLLVPTNYPSCSPMLLDRLPVDVSGQYEDLSEKAKLKLSTSLENILEPISLEQIARTWDDCARAVICEYAQQSGGGSFSTTYGTWENCLSAA
Length780
PositionTail
OrganismVitis vinifera (Grape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> Vitales> Vitaceae> Viteae> Vitis.
Aromaticity0.04
Grand average of hydropathy-0.399
Instability index55.48
Isoelectric point6.22
Molecular weight85708.50
Publications
PubMed=17721507

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26296
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.68|      19|      23|     304|     326|       1
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  304-  326 (24.60/24.47)	LQQiHLKQQkeqQMADAKQMMKQ
  327-  345 (34.07/19.27)	FQQ.HETQQ...QLKKKEDIMQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     269.80|      67|      70|     148|     217|       2
---------------------------------------------------------------------------
  148-  199 (66.67/37.10)	...........................................EKVE......NRIIGIL..........YSNGSRKPDSSVQQEE..LPM........PDMHSLQ....PVR.......SQ..SQT.........PQVeSDL
  200-  294 (87.44/52.03)	QPMKLqsTVSSMQKNN....V...DnlhndlisslsevataqkNIMN......PQLSGTK..........SKSQQLHAVKPLQQDS..VGS........PHIPVSA....PQQ.......SM..NDTslsqnsvniPQ..HNT
  347-  425 (65.71/33.23)	QPAQL..GVHKMPQNT....MnkeD.................eLKVKqaldfaP...GVLqhcsasqhlaYNQHQLKSRGSF......VSV........PQL..LQ....PVS.......DQipQSS.........PQI..DQ
  426-  508 (49.99/23.15)	KNI.L...VSSKKTETslkvV...D..................SLSN.....vPSPS.TP..........FSQYPMLGDIGGQQATslMGSatslvistPGISSSSlleePLQrlielvkSM..SD.................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     226.78|      71|     641|      44|     115|       4
---------------------------------------------------------------------------
   44-  115 (121.75/61.47)	PLAvLLVPTA.PQ.SKYLSTTMHANLGDWQEEVYQKIK.....SMNDMYLP.ELIQIYKKFAARYQQLVSLPQQPMGDQS
  687-  765 (105.03/49.53)	PLH.LLVPTNyPScSPMLLDRLPVDVSGQYEDLSEKAKlklstSLENILEPiSLEQIARTWDDCARAVICEYAQQSGGGS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26296 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KPDSSVQQEELPMPDMHSLQPVRSQSQTPQVESDLQPMKLQSTVSSMQKNNVDNLHNDLIS
2) LSEVATAQKNIMNPQLSGTKSKSQQLHAVKPLQQDSVGSPHIPVSAPQQSMNDTSLSQNSVNIPQHNTHPLRLNSSRLQQIHLKQQKEQQMADAKQMMKQFQQHETQQQLKKKEDIMQQQQPAQLGVHKMPQNTMNKEDELKVKQ
165
227
225
371










Molecular Recognition Features






MoRF SequenceStartStop




NANANA