<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26291

Description Kinase family protein
SequenceMEEKKVVRALSEHLSLPPPPSPSVAVAINGKKKSKYVAFWALEKFIPEGFTDFKLLYVRPPVSYIPTPMGNTISVSELRDDVVSAYKQEVDWSTNEMLRPYKKMFERRKVQVEVLVLDSNEPAAAIAEEISGTGVTKLVIGMSLRGFFSRKIDMSSMIATAVPRFCTVYVISKGKLASVRPSESDASGSIRFERSSSTSGSTDSPRLPPEYQDFLSFVSEGQSRVSPFSPAPKNSLGSSAVVQMDTSSSGTDQEEVSTGRGMEIVHSGIEGKKNKDESFSASFPMGTEAYNSMSWTSKWRDHEDRREIRSSSSSNNHDLANMDWGAVVPENYSWVSHCASNMSDGLLSVHSITDNQVNLNFEIEKLRAELKHVQEMYAMAQTETVGASQKLTELNQRRFEESEKLVELKEKEEVAKDTGSKEKQRYNEAMKEAEKVKELMMREALHRREAEIKAERDAREKDKLQASLVSPGIQYQHYTWEEITAATSDFAENLKIGIGAYGTVYKCNLHHTTGAVKVLHAGETQLSKQFDQELEILSKIRHPHLVLLLGACPERGCLVYEYMDNGSLDDRLMLVNNTPPIPWFDRFRIALEVASALVFLHKSKPRPIIHRDLKPGNILLDHNFVSKLGDVGLSTMVNQDDDSSNLTIFKKTSPVGTLCYIDPEYQRTGIISPKSDVYSLGIVILQLLTAKPAIAITHMMEEAIGDDAEFMAILDKKAGSWPISETRELAALGLCCTEMRRRDRPDLKDQIIPALERLKKVADKAQNSLSRTPSGPPSHFICPLVKGVMNEPCVAADGYTYDREAIEEWLRENDTSPVTNLPLPNKNLLANYTLYSAIMEWKSNKQ
Length846
PositionTail
OrganismArabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Arabidopsis.
Aromaticity0.07
Grand average of hydropathy-0.434
Instability index42.57
Isoelectric point5.92
Molecular weight94671.54
Publications
PubMed=21478890

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26291
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     246.68|      78|     754|       4|      96|       1
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    4-   96 (124.49/94.70)	KKVVRALSEHLSLPP..PPSPSVAVAINGKKKSKYVAfwalekfiPEGFT.DFKLL..YVR....PPVSYIPTPMGNTISVSELrddvvsaYKQEVDWSTNE
  759-  845 (122.20/67.52)	KKVADKAQNSLSRTPsgPPSHFICPLVKGVMNEPCVA........ADGYTyDREAIeeWLRendtSPVTNLPLPNKNLLANYTL.......YSAIMEWKSNK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.75|      22|      37|     352|     375|       2
---------------------------------------------------------------------------
  352-  375 (28.46/28.72)	ITD.NQVNLNfEIEKLrAELKHVQE
  391-  413 (32.29/20.85)	LTElNQRRFE.ESEKL.VELKEKEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.13|      39|     453|     171|     212|       3
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  171-  212 (58.60/45.11)	ISK.GK..LASVRPSESDASGSIRFERSSSTsGSTdsPRLPPEYQ
  625-  666 (60.53/36.12)	VSKlGDvgLSTMVNQDDDSSNLTIFKKTSPV.GTL..CYIDPEYQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.13|      28|      30|     451|     479|       5
---------------------------------------------------------------------------
  451-  479 (42.74/34.84)	EIKAErDAREKDKLQASLVSPGIQYQ...HYT
  482-  512 (42.39/29.14)	EITAA.TSDFAENLKIGIGAYGTVYKcnlHHT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.15|      18|      37|     281|     298|       6
---------------------------------------------------------------------------
  281-  298 (33.74/19.34)	ASFPMGTEAYNSMSWTSK
  320-  337 (35.41/20.63)	ANMDWGAVVPENYSWVSH
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26291 with Med32 domain of Kingdom Viridiplantae
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