<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26290

Description Kinase family protein
SequenceMGDGALIVAVAIKGNNSKTKGVVRWALQEFASREHVVFKLLHVQPRDSNTVSITRKDSTTSVYKKDVDRKTREMLLPSRDMFVHREVQLDIMVLESDDVADAISKAVQDHGISELVIGASSSIIFSWKLKRSNLSSRISDATPRFCTIHVISKGKLLNVRKSDMDTETSIADDRSESRFSSDSHSGSVSSTSSHQFSSTPLLFQRVQALSTVNQKVGTNIGKQNNDQHHHHHNRAGSLDVDESKLLNQKGFYRTSSSGIGYGGSDISSWRSSQVEEASSSSTYSDPTSSSSQANKDFELEKLKIELRHIKGMYAVAQSEVIDASKKMQDLNQRRSEEAMRLKNLTIREEEAGEVVEMEKERQEEAENEAELVKECIERETEERLEAEARAEEVRKEKQRLEDALEGGPLQRQQYMKFEWEEIVEATSSFSDDFKIGVGGYGSVYRCNLHHTTVAVKVLHSDKSSLTKQFHQELEILSKIRHPHLLLLLGACPERGSLVYEYMHNGSLEERLMKRRPNVDTPQPPPLRWFERFRIAWEIASALYFLHTNEPRPIVHRDLKPANILLDRNNVSKIGDVGLSKMVNLDPSHASTVFNETGPVGTFFYIDPEYQRTGVVTPESDIYAFGIILLQLVTARSAMGLAHTIEKALRDQTGKFTEILDKTAGDWPVKEAKEMVMIGLRCAEMRKRDRPDLGKEILPVLERLKEVASNARNMFADNLIDHHHNAPTHFYCPITKDVMENPCVASDGYTYEKRAIKEWLQKNHKSPMTDLPFPNHSLLPNHSLLSAIKEWRSLIK
Length795
PositionTail
OrganismArabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Arabidopsis.
Aromaticity0.06
Grand average of hydropathy-0.567
Instability index45.75
Isoelectric point6.48
Molecular weight90043.70
Publications
PubMed=21478890

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26290
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     233.08|      66|     488|     200|     269|       1
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   96-  166 (66.75/32.35)	.............SDDVADaiSKAV..QDHGI...SELVIGASSSIIFSWklkrsnlssrisdatP....RFCTIHVISKGKLLNVRKSDMDT
  167-  227 (62.59/37.34)	.........ETSIADDRSE..SRFSsdSHSGSVSSTSSH.QFSS....................tPllfqRVQALSTVNQKVGTNIGKQNNDQ
  228-  269 (60.90/28.06)	HHH....HHNRAGSLDVDE..SKLL..NQKGFYRTSSSGIGYGGSDISSW...........................................
  721-  758 (42.84/17.67)	HHHnaptHFYCPITKDVME..NPCV..ASDGY........TYEKRAIKEW...........................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.40|      28|      28|     337|     364|       2
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  337-  364 (45.81/32.06)	EAMRLKNLTIREEE.......AGEVVEMEKERQEE
  368-  402 (37.59/24.98)	EAELVKECIERETEerleaeaRAEEVRKEKQRLED
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26290 with Med32 domain of Kingdom Viridiplantae
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