<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26287

Description Kinase family protein
SequenceMDSYFKNSYLDPKQVRAQLPKRASSDLASPSQPLTIAIAISGSSKSKNVVKWALKKFGSEENVIFKLIHIHPKLTSVPTPSGNTVSISEAPEDVAATYRQNVMQETKETLLKPFKKMCERKKVAVELQVLESNSVAVAITREVNEHLISNLVIGRSSHGAFSSSRYHDITAKISAYVSNLCTVYVVSKGVYILSKDKLSSDTERNETLRDSGNEKTDSSSWSSGSGPNSDVMSNALKSNPHALSKKRLQHLPTIIRGVSVPIDETSSAESDETRSMSSDVAEEVSKRGSPETSRSVSWNHQFRDFDERKDAMSSMSMYSNHEYGNVTQGGDYFTDNQDTLNEISKLRAELRHAQEMYAVAQVETLDASRKLNELKFEELTLKEHEMKGLAEKETQTFEKKLREERDTEQRREAEIKAACEAKEKEKLEEISLVAPKLQYQEFTWEEIITATSSFSEDLKIGMGAYGDVYKCNLHHTIAAVKVLHSAESSLSKQFDQELEILSKIRHPHLVLLLGACPERGALVYEYMENGSLEDRLFQVNNSEPIPWFVRFRIIWEVASALVFLHKSKPTPIIHRDLKPANILLDHNFVSKVGDVGLSTMIQVDPLLTKFTMYKQTSPVGTLCYIDPEYQRTGRISPKSDVYALGMIILQLLTAQPAMALTYTVEIAMENNNDDELIQILDKKAGNWPIEETRQLAALALYCTELRAKDRPDLEDQILPVLESLKKVADKARNSLSAAPSQPPSHFICPLLKDVMKEPCIAADGYTYDRRAIEEWMENHRTSPVTDSPLQNVNLLPNHTLYAAIVEWRNRNQ
Length812
PositionTail
OrganismArabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Arabidopsis.
Aromaticity0.07
Grand average of hydropathy-0.469
Instability index46.41
Isoelectric point5.95
Molecular weight91433.59
Publications
PubMed=21478890

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26287
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     209.35|      58|      58|      10|      67|       1
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    5-   64 (86.35/56.31)	FKNsyLDPKQVR.AQLP....KRASSD.LASPSQ.PLTIAIAI..SGS..SKSKNVVKW..ALKKFGSEENVI
   65-  124 (77.49/49.74)	FKLihIHPKLTS.VPTP.......SGN.TVSISEaPEDVAATY..RQNvmQETKETLLK..PFKKMCERKKVA
  252-  309 (45.51/26.04)	.......PTIIRgVSVPidetSSAESDeTRSMSS...DVAEEVskRGS..PETSRSVSWnhQFRDFDERK...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.98|      24|      28|     340|     364|       2
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  340-  364 (35.69/25.78)	LNEISKLRaELR......HAQEMYAVAQVET
  365-  394 (33.29/19.29)	LDASRKLN.ELKfeeltlKEHEMKGLAEKET
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26287 with Med32 domain of Kingdom Viridiplantae
Unable to open file!