<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26286

Description Predicted protein
SequenceMDSFFKNSYLDPKPARAQLPKRASSDLASPSQPLNIAIAISGSDKSKNVLKWALNKFGSDKNVTFKLIHIHPKITTLPTASGNIVSISEELEDVATAYRQKVMQETKETLLKPFKKMCQRKKISMKLVFESSLTKVAVELQVLESNSVAVAITKEVNQHLISNLVIGRASQSASSRNYDITATISASVSNLCTVYVVSKGGVHILAKDKLSSDTERNDTSESGYERTDSSCSSGSGPNSDLMSNALKSNPHVLSKKRMQNLPTIVREVSVLTETSSTESDETRKRSSDAAEEASKRSSPEKSRSVSWNPRFRDFDERKDAMSSMSSNFEYGNVTPFGNYFTDNQDTLNEISKLRAELRHAHEMYAVAQVETLDASRKVGLKKSQEKDNLCLMKLRSYCFVCLIKLPLQWFQLNELKFEELTLMEHETKGLAAKETEKFEQKRREEREAAQRREAEMKATHEAKEKEKLEESSLVAPKLQYQEFTWEEIITATSSFSEDLKIGMGAYGDVYKCNLHHTIAAVKVLNSAESSLSKQFDQELEILSKIRHPHLVLLLGACPEHGALVYEYMENGSLEDRLFQVNDSQPIPWFVRFRIAWEVASALVFLHKSKPTPIIHRDLKPANILLNHNFVSKVGDVGLSTMIQAANPLSTKFTMYKQTSPVGTLCYIDPEYQRTGRISPKSDVYAFGMIILQLLTGQQAMALTYTVETAMENNDYDELIQILDQKAGNWPIEETRQLAGLALQCTELRSKDRPDLEDQILPVLESLKKVADKERNSLSTAPSQPPSHFICPLLKDVMKEPCIAADGYTYDRRAIEEWMENHRTSPVTESPLQNVSLLPNHTLYAAIVEWRKRNQ
Length854
PositionTail
OrganismArabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Arabidopsis.
Aromaticity0.07
Grand average of hydropathy-0.476
Instability index49.69
Isoelectric point6.73
Molecular weight96244.35
Publications
PubMed=21478890

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26286
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     454.37|     136|     328|       5|     149|       1
---------------------------------------------------------------------------
    5-  149 (206.66/142.56)	FKNSYLDPKPARAQLPK.RAssDLASPSQPLNIAiAISGSDKSKNV.LKWAL..NKFGSDKNVTFKL........IHIHPKITTL.PTASGNIVSIS.EEL.......EDVA.TAYRQKVMQETKETLLKP.FKKMCQRKKI..SMKLVFESSltkvavELQVLESNS.VA
  233-  329 (89.67/47.29)	.....................................SGSGPNSDL.MSNALksNPHVLSKKRMQNL........PTIVREVSVLtETSSTESDETR.KRS.......SDAAeEASKRSSPEKSRSVSWNPrFRDFDERKDAmsSMSSNFE....................
  336-  475 (158.04/92.87)	FGNYFTDNQDTLNEISKlRA..ELRHAHEMYAVA.QVETLDASRKVgLKKSQ..EK...DNLCLMKLrsycfvclIK.......L.PLQWFQLNELKfEELtlmehetKGLA.AKETEKFEQKRREE......REAAQRREA..EMKATHEAK......EKEKLEESSlVA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26286 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KDKLSSDTERNDTSESGYERTDSSCSSGSGPNSDLMSNALKSNPHVLSKKRMQ
2) KETEKFEQKRREEREAAQRREAEMKATHEAK
3) TIVREVSVLTETSSTESDETRKRSSDAAEEASKRSSPEKSRSVSWNP
207
433
263
259
463
309










Molecular Recognition Features






MoRF SequenceStartStop




1) MDSFFKNSYL
1
10