<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26285

Description Uncharacterized protein
SequenceMGDGSSTRSNSSNSSSEKPEWLQQYNLVGKIGEGTYGLVFLAKTKAPPKRPIAIKKFKQSKDGDGVSPTAIREIMLLREISHENVVKLVNVHINFADMSLYLAFDYAEYDLYEIIRHHRDKVGHSINTYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEHGIVKIADFGLARIYQAPLKPLSDNGVVVTIWYRAPELLLGSKHYTSAVDMWAVGCIFAELLTLKPLFQGAEAKSSQNPFQLDQLDKIFKILGHPTMDKWPTLVNLPHWQGDVQHIQAHKYDSVGLHNVVHLNQKSPAYDLLSKMLEYDPLKRITASQALEHEYFRVDPLPGRNAFVATQPMEKNVNYPIRPVDTNTDFEGTTSINPPQAVAAGNVAGNMAGAHGMGNRSMPRPMVAHNMQRMQPQGMMAYNFPAQAGLNPSVPLQQQRGMAQSHQQQQLRRKDPGMGMSGYAPPNKSRRL
Length469
PositionKinase
OrganismArabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Arabidopsis.
Aromaticity0.08
Grand average of hydropathy-0.423
Instability index41.01
Isoelectric point9.21
Molecular weight52574.59
Publications
PubMed=21478890

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:EnsemblPlants

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
kinase binding	GO:0019900	IEA:EnsemblPlants
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26285
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     144.18|      40|      40|     383|     422|       1
---------------------------------------------------------------------------
  383-  422 (76.72/49.60)	NVAGNMAGAHGMGNRSMPRPMVAHNMQRMQP.QGMMAYNFP
  423-  463 (67.45/42.68)	AQAGLNPSVPLQQQRGMAQSHQQQQLRRKDPgMGMSGYAPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.62|      28|      42|     161|     190|       2
---------------------------------------------------------------------------
  161-  190 (44.28/35.87)	LVMGEGEEHGIVKIADFGLarIYQA..PLKPL
  206-  235 (45.34/30.10)	LLLGSKHYTSAVDMWAVGC..IFAEllTLKPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.47|      31|      40|     306|     339|       3
---------------------------------------------------------------------------
  306-  339 (39.68/35.61)	AYDLLSKMLEYdPLKRITASQALEHEyFRVDPlP
  346-  376 (55.79/33.32)	ATQPMEKNVNY.PIRPVDTNTDFEGT.TSINP.P
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26285 with CDK8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EKNVNYPIRPVDTNTDFEGTTSINPPQAVAAGNVAGNMAGAHGMGNRSMPRPMVAHNMQRMQPQGMMAYNFPAQAGLNPSVPLQQQRGMAQSHQQQQLRRKDPGMGMSGYAPPNKSRRL
351
469










Molecular Recognition Features






MoRF SequenceStartStop




1) LRRKDP
2) MSGYAPPNKSRRL
3) YGLVFLAKTKAPPKRPIAIKKFKQ
448
457
36
453
469
59