<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26274

Description Kinase family protein
SequenceMSRSPDNLALPPPPPPPPSRTVVVALSGSSKSKYVVTWALEKFAPEGNVGFKLLHIHPMITSVPTPMGNAIPISEVRDDVVTAFRQEILWQSEEMLKPFTKLFVRKKVAVEVLVIESDNLAAAIAEEVTRDSIDRIVIGGSSRSFFSRKADMCSAISALMPNFCTVYVVSKGKLSCVRPSDSDGNATIRDDGSERTNSSSGSSGPTSDVMSSVHDSQSRALSLPVRRMQNFPTIARQASVPMETSSVGSDETRCMSLDAEEARDVSSINRSSTDTTSRWTPRLRDYEERKEAMSSSSSNREYGNIGSRFSWTGMGVDNTHSRASQQASNMSDALSEQSYTDSQVNLNFEVEKLRAELRHVQEMYAMAQTETFDASRKLGELNQRRLEEAIKLEELKLKEYEARELAEREKQNVEKARRDAESMRERAEREIAQRREVERKSARDTKEREKLKGTLGSPQLQYQHFAWEEIMAATSSFSEELKIGMGAYGAVYKCNLHHTTAAVKVLHSAESRLSKQFQQELEILSKIRHPHLVLLLGACPEQGALVYEYMENGSLEDRLFQVNNSPPLPWFERFRIAWEVAAALVFLHKSKPKPIIHRDLKPANILLDQNFVSKVGDVGLSTMVQVDLLSTKFTIYKQTSPVGTLCYIDPEYQRTGMISSKSDVYSFGMIVLQLLTAKPAIALTHFVESAMDSNDEFLKILDQKAGNWPIEETRELTALALCCTELRGKDRPDLKNQILPALENLKKVAEMARNSLSGVSTQPPTHFICPLLKDVMNEPCVAADGYTYDRRAIEEWLEEHDTSPMTDSPLHSKNLLPNYTLYTAIMEWRSTR
Length832
PositionTail
OrganismArabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Arabidopsis.
Aromaticity0.07
Grand average of hydropathy-0.456
Instability index49.24
Isoelectric point6.04
Molecular weight93414.89
Publications
PubMed=21478890

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26274
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      91.66|      23|      23|     403|     425|       1
---------------------------------------------------------------------------
  376-  399 (26.46/16.51)	RKLGELNQRRLE.EAIKLEElKLKE
  403-  425 (37.86/27.04)	RELAEREKQNVE.KARRDAE.SMRE
  429-  449 (27.34/17.32)	REIAQR..REVErKSARDTK.E.RE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.33|      16|     109|     457|     473|       2
---------------------------------------------------------------------------
  457-  473 (28.96/22.55)	SPQL.QYQHF..AWeEIMAA
  565-  583 (24.37/13.64)	SPPLpWFERFriAW.EVAAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.69|      29|      31|     195|     223|       4
---------------------------------------------------------------------------
  195-  223 (48.59/33.17)	RTNSSSGSSGPTSDVM..SSVHDSQSRALSL
  227-  257 (47.10/31.90)	RMQNFPTIARQASVPMetSSVGSDETRCMSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     142.16|      48|     113|      24|      79|       7
---------------------------------------------------------------------------
   24-   79 (75.11/74.57)	VALSGSSKS....KYVVTWALEKFAPegnvGFKLLHI..HPMITSV.PTPM.GNAipisEVRDD
  136-  191 (67.04/46.78)	IVIGGSSRSffsrKADMCSAISALMP....NFCTVYVvsKGKLSCVrPSDSdGNA....TIRDD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26274 with Med32 domain of Kingdom Viridiplantae
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