<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26273

Description Uncharacterized protein
SequenceMRPPLTGSGGFSGGRGRGGYSGGRGDGGFSGGRGGGGRGGRGFSDRGRGRGRGPPGRGTRGGRGPPGRGGMKGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKVEYRVWNPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPSKYRMLVGMVDVIFSDVAQPDQARILGLNASYFLKSGGHFVISIKANCIDSTVPAEAVFQTEVKKLQQEQFKPAEQVTLEPFERDHACVVGGYRMPKKAKAATAA
Length317
PositionUnknown
OrganismArabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Arabidopsis.
Aromaticity0.07
Grand average of hydropathy-0.403
Instability index28.50
Isoelectric point10.08
Molecular weight33511.77
Publications
PubMed=21478890

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants
nucleolus	GO:0005730	IEA:EnsemblPlants

GO - Biological Function
methyltransferase activity	GO:0008168	IEA:UniProtKB-KW
mRNA binding	GO:0003729	IEA:EnsemblPlants
ribonuclease activity	GO:0004540	IEA:EnsemblPlants

GO - Biological Process
methylation	GO:0032259	IEA:UniProtKB-KW
rRNA processing	GO:0006364	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26273
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.20|      16|      17|       9|      25|       1
---------------------------------------------------------------------------
    7-   24 (29.17/ 9.89)	GsGGFSGGRGRGGySGGR
   25-   41 (33.03/ 8.68)	GdGGFSGGRGGGG.RGGR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.09|      13|      17|      46|      60|       2
---------------------------------------------------------------------------
   46-   60 (19.74/14.33)	RG.RGRGrGPPGrGTR
   63-   76 (23.35/ 8.27)	RGpPGRG.GMKG.GSK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.65|      16|      17|     205|     221|       3
---------------------------------------------------------------------------
  205-  221 (26.22/19.58)	IIEDARHPSKYRMLvGM
  225-  240 (26.43/14.92)	IFSDVAQPDQARIL.GL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26273 with Med36 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MRPPLTGSGGFSGGRGRGGYSGGRGDGGFSGGRGGGGRGGRGFSDRGRGRGRGPPGRGTRGGRGPPGRGGMKGGSKV
1
77










Molecular Recognition Features






MoRF SequenceStartStop




1) GRGDGGFSG
2) RGGRGFSDRG
3) RGRGGYS
23
38
15
31
47
21