<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26272

Description Kinase family protein
SequenceMAKHRRDRDGGFGVDGLVAVAIDRDKNSQTALKWAVDNLLQKGQTVVLVHVKPRASSLSTNPSINSNSSKMSQINNDSSLVCGDPEGSYKQLFLPFRCLCSRKDIQCKDVLLEESDVAKALVEYANQVVIEVLVVGSSSKGGFLRFNKPTDIPGTITKTAPDFCTVYVITKGKLSTKKTASRAAPSVSPLRIQLQQTSLKPHPPLPSATTNTRAERQSFESQHRRSLDDQSDSFRSPYTRRGLNGRSYGDLSIPDSDICFNSSGRPSIERNSPSLYDNSDPNRTPPRLSNFSDIDYGSFESMTFGRRSMDISSPTAFSTGSFENERFSSASQGGDDVEAEMRRLKLELKQTMEMYSTACKEALTAKHKATELQRWKLAEERKFEEAKLAEEAALAIAEKEKAKSKAAMEAAEAAQRIADIESRKRVDAEMKALKESEARTKAVNALANSDVRYRKYSIEEIEDATEFFDEKYKIGEGGYGPVYKCYLDHTPVAVKALRPDAAQGRSQFQQEVEVLSSIRHPNMVLLLGACPECGCLVYEFMANGSLEDRLFREGDSPPLSWQTRFRIAAEIGTVLLFLHQTKPEPLVHRDLKPANILLDRNFVSKVADVGLARLVPPSVANTVTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGIMFLQLITGKPPMGLTHYVERALEKGNLKDLLDPAVSDWPVEDTTEFAKLALKCAEIRRKDRPDLSKVILPELNRLRVLAEESTKTAVVINSPGPTPTESQSSSPKL
Length765
PositionTail
OrganismArabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Arabidopsis.
Aromaticity0.07
Grand average of hydropathy-0.475
Instability index50.59
Isoelectric point8.06
Molecular weight84815.20
Publications
PubMed=21478890

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
mRNA binding	GO:0003729	IEA:EnsemblPlants
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process
root epidermal cell differentiation	GO:0010053	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26272
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     118.95|      33|      47|     216|     249|       1
---------------------------------------------------------------------------
  216-  249 (56.81/38.68)	RQSFEsQHRRSLDDQSDSFRSPYTRRGLNGRSYG
  265-  297 (62.13/38.16)	RPSIE.RNSPSLYDNSDPNRTPPRLSNFSDIDYG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     164.92|      54|     319|     101|     205|       3
---------------------------------------------------------------------------
  142-  205 (77.73/121.47)	GFLRFNKPTdIPGTITK.....TAPDFCTV...YVITkGKLSTKKTASraapSVSPLRIQLqqtsLKPHPPL
  610-  671 (87.19/38.92)	GLARLVPPS.VANTVTQyrmtsTAGTFCYIdpeYQQT.GMLGVKSDIY....SLGIMFLQL....ITGKPPM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.19|      30|     319|     375|     424|       4
---------------------------------------------------------------------------
  339-  370 (46.47/31.40)	AEMRrlKLELKQTMEMYSTACKEALTAKHKAT
  378-  407 (45.72/48.74)	AEER..KFEEAKLAEEAALAIAEKEKAKSKAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     145.74|      46|     168|     539|     585|       5
---------------------------------------------------------------------------
  539-  585 (78.10/57.07)	EFmANGSLEDRLFREGDSPPLS.....WQTRFRIAAEIGT.VLLFLHQTKPEP
  704-  755 (67.64/44.04)	EF.AKLALKCAEIRRKDRPDLSkvilpELNRLRVLAEESTkTAVVINSPGPTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.14|      11|      20|     298|     308|       7
---------------------------------------------------------------------------
  298-  308 (20.65/13.51)	SFESMTFGRRS
  321-  331 (19.49/12.34)	SFENERFSSAS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26272 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) CFNSSGRPSIERNSPSLYDNSDPNRTPPRLSNFS
2) LRIQLQQTSLKPHPPLPSATTNTRAERQSFESQHRRSLDDQSDSFRSPYTRR
259
190
292
241










Molecular Recognition Features






MoRF SequenceStartStop




NANANA