<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26266

Description Predicted protein
SequenceMQRYHPANCTSAVNNSAIGGASARDSGRADSSSIGNYSLNSRHVDRKKRPPPLTPYKLKCEKDGLNSRLGPPDFHPPTSNSPEENLTKEYVQFGYKETVDGLKESEEIILSQVHTFSKPVVHKCKEAVRKCLRAINESRALKRKVIKRFSVSNPFQFRFCAEFQAGQVYGVPLSGSLLCKPGFPEQRSCGEETKKKWIESLSQQHKRLRSLADNIPGYRRKTLFEVLIRNNVPLLRATWFIKVTYLNQVHCWARVRPSPAAISSGTPDKTQASRCEQWTKDVIEYLQYLLDELLSRNSSFTAQQTRDRSPQMLYTGSMQKNSPASASLYGEETSLHFKWWYMVRLLQWHHAEGLLFPNLIVDWVLKLLQLCEFPFCLLQEKEVFEILQLLLPIVYGVLESIVLSQTYVQSLVAIAVRFIQEPAPGGSDLVDNSRRAYTLSALIEMVRYLVLAAPDTLVASDCFPLPPSIAACGPNDVSYTSKGYEKLEKLRSNSAENSTQFQGRGVVSRFEFLSFDYTISTIQRSADDLAKIASAGYPQHNVAKAVQALDKALTDGDIRAAYSYLFEDLCNGAVDETWIADVSPCLRSSLRWIGAISTSFVCSVFFLIEWATCDFRDFRAGVPKDIKFSGRKDCSQVYLVIQLLKQKILGGEFAARKGKNSRNNLLGVSKPSSSVDAFESPGPLHDIIVCWIDQHEVHKGGAKRLQLLVFELIRSGIFNPIAYVRQLIVSGMIDVIQLAVDPERRMRHHRILKQLPGCFVHETLEEAQLFGGDKLSEAVRTYSNERRLLLRELLVEKGKYWNNIVLSDQKSKKHSTSLPSVVFPRPCNAMANSDGPRKHTKSRVDIGELKERISALLQFPGMSCGVKNPMQEEFQNSVKRSSGSVYSKMDQPEATPGCEDCRRAKRPKMNDEKSSCYQGNSPIASDEEDNWWIKKGSKTLESSLKVDPQIELTKQVPRGRQKMARKTQSLAQLQAARIEGSQGASTSHVCDNKVSCPHHGPGVEGENHKVVDVFRTSTPVDIVSVGNSLKHLQFVYKRSIAVWITTVVRQLVEEPQKSSARVGQFNRGAPVEEKSTIRWKLGADELSSILFLLDISLDLVSVGGRNLVTVPRNVENNMCEIGEAILVSSLRRYENILLSADLVPEAMTALMNRVASLMPSNGKISGSAALVYARYILKRYGSLPSVVEWHNNFKATCEKRLLSELDHTRSGNGEYGNPLGVPAGVDNPDDYIRKKISIGGTRPSRVGFNMREVVQRHVEEATHYLRKLTGTGTMKASLAEKNDDGYQVAQQIVVGLMDCIRQTGGAAQEGDPSLVSSAVSAIINSVGLSMARISDFSLGNIYQNHPSGVDSSNIARYILQIHITCLCLLKEALGERQSRVFEIALATESSTALAGAVAPGKGSRGQHQLSPESYDSNANNSTNDMPNGTGKMALSRGTKITAAVSALVIGSITRGVVTLERIVGLLRLKEYLDFVQFVRRTKSSSNGSARSMGASKAESPIEVYVHWFRLLVGNCKTVSEGLVLELVGESSVVAISRMQRMLPLKLVFPPAYSIIAFVLWRPFVSNSNSNSSVHEDTHRLYQSLTMAFHDVIKHLPFRDVCLRDTQGLYELIVADSTDAEFASVFESHGLDMHLKSVAFAPLRARLFFNSIIDCKVPSSGYSHEGVNEAKTRHQGNGTKLVDKLVSVLDSLQPAKFHWQWVELRLLLNEQALTEKLENHDMPLTDAIRSSCPTSEEPAASEYEKNFTQILLTRLLVRPDAVPLFSEVVHLFGRSVEDSMLKQAEWILAGQDVLFGRKTIRQKLIIVGESKGLPTKPQFWKPWGWCNNSTSDHITANKAGKKRKFEITSIEEGEVIEEGSGSKKVLLPRAVEENSPSVGYGITTERAFVQLVLPCIDQSSDESRSTFVNELVRQFSSIEQQLSSVTNRSTTNNKHMGTASSGSEISSSKGSNRKGLRGGSPSLARRSSANTTDTAPPPSPAALRASMSLRLQFLLRLLPVICGEPSFRNTRHALASTIVRLLGSRVVYEDCAVCSPRIEVSKAETESTIDPSSMADLSSEVLFDRLLFVLHGLLSNHQPKWLKPRPSSNESSKDFTLFDRDAVESLQNELSRMQLPDTIRWRIQAAMPILLPSLRCSLSCQPQSVPPTALTLVQPSGSAAAAGPNQRNSPAISKTGTAAVQGKLKQTMLAPPQQQEADNTDVVDPWTLLEDGTSSGLSSSNASNSSDMANLRAICWLRGAVRVRRTDLTYVGSVDDDS
Length2257
PositionKinase
OrganismArabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Arabidopsis.
Aromaticity0.07
Grand average of hydropathy-0.288
Instability index48.50
Isoelectric point8.93
Molecular weight249971.14
Publications
PubMed=21478890

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of development, heterochronic	GO:0040034	IEA:EnsemblPlants
regulation of radial pattern formation	GO:0090213	IEA:EnsemblPlants
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26266
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.02|      30|      33|    1294|    1323|       1
---------------------------------------------------------------------------
 1294- 1323 (52.68/30.72)	VGL.MDCIRQ.TGGAAQEGDPSLV.SSAVSAII
 1326- 1358 (40.33/21.75)	VGLsMARISDfSLGNIYQNHPSGVdSSNIARYI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.22|      15|      33|    2050|    2064|       2
---------------------------------------------------------------------------
 2050- 2064 (26.72/16.35)	PSSMADLSSEVLFDR
 2085- 2099 (27.50/17.07)	PSSNESSKDFTLFDR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     597.68|     201|     386|     597|     847|       3
---------------------------------------------------------------------------
  597-  842 (306.26/328.48)	STSFVCSVFFL.......IEWATCDFRD.FRAGVPKDIKFSGR..KDCSQVY.LVIQLLKQKILggefaarkgknsRNNLLGVSKPSSSVDAFESPGPLHD.IIVCWidqhevhKGGAKRLQLLVF......ELIRSGIFNPIAYVRQlIVSGMIDVIQ.LAVDPERRMrhhrilkqlpgcfvhetleEAQLFGGDKLSEAVRTYSNErrllLRELLVEKGKYWNNIVLSDQKS.KKHSTSLPSVV.....FPRPCNAMANSDgpRKHTKS
  985- 1210 (291.41/208.13)	STSHVCDNKVScphhgpgVEGENHKVVDvFRTSTPVDIVSVGNslKHLQFVYkRSIAVWITTVV............RQLVEEPQKSSARVGQFNRGAPVEEkSTIRW.......KLGADELSSILFlldislDLVSVGGRNLVTVPRN.VENNMCEIGEaILVSSLRRY...................ENILLSADLVPEAMTALMNR....VASLMPSNGKISGSAALVYARYiLKRYGSLPSVVewhnnFKATCEKRLLSE..LDHTRS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.36|      20|      33|    1225|    1244|       4
---------------------------------------------------------------------------
 1225- 1244 (35.65/23.91)	VDNPDDYIRKKISIGGTRPS
 1258- 1277 (33.71/22.18)	VEEATHYLRKLTGTGTMKAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.70|      17|      33|    2000|    2017|       5
---------------------------------------------------------------------------
 2000- 2017 (26.25/18.81)	ICGePSFRNTRHALASTI
 2032- 2048 (28.45/15.69)	VCS.PRIEVSKAETESTI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.64|      19|      33|    1386|    1404|       7
---------------------------------------------------------------------------
 1386- 1404 (30.42/18.03)	ATESSTAL...AGAVAPGKGSR
 1418- 1439 (27.22/15.32)	ANNSTNDMpngTGKMALSRGTK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.71|      25|      37|    1923|    1947|      11
---------------------------------------------------------------------------
 1923- 1947 (41.35/20.80)	SVTNRSTTNNKHMGTASSGSEISSS
 1961- 1985 (42.36/21.49)	SLARRSSANTTDTAPPPSPAALRAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.84|      17|     353|     575|     591|      13
---------------------------------------------------------------------------
  575-  591 (32.42/16.18)	DETWIADVSPCLRSSLR
  929-  945 (32.42/16.18)	DNWWIKKGSKTLESSLK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.46|      19|     714|     151|     169|      16
---------------------------------------------------------------------------
  151-  169 (37.29/22.37)	VSNPFQ..FRFCAEFQAGQVY
  866-  886 (30.17/16.66)	VKNPMQeeFQNSVKRSSGSVY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     164.63|      55|    1118|     382|     442|      17
---------------------------------------------------------------------------
  382-  442 (72.24/70.99)	EVF.EILQLLLPIVYGVLESIVLSQTYVQSLVAIAvRfIQEPAPggSDLVDNSrrAYTLSAL
 1502- 1557 (92.39/63.02)	EVYvHWFRLLVGNCKTVSEGLVLELVGESSVVAIS.R.MQRMLP..LKLVFPP..AYSIIAF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.30|      16|     812|     913|     928|      19
---------------------------------------------------------------------------
  913-  928 (30.25/20.35)	KSSCYQGNSPIASDEE
 1728- 1743 (30.04/20.14)	RSSCPTSEEPAASEYE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26266 with Med12 domain of Kingdom Viridiplantae
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