<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26264

Description Uncharacterized protein
SequenceMEPERLKFGGPKELCGAADLISQFKLVQHHEFFCKKSLPVSLSDSHYLHNVVGDTEIRKGEGMQLDQLIQSISQSRETNVRIQPFDIDELKESFQLNDMTPVELPPAEKGAPTIPSKSKSESKDKDRKHKKHRDRDKDKDREHKKHKHKHKDRSKDKDKDKDRDRKKDKNGHHDSGDHSKKHHDKKRKHDGDEDLNDVQRHKKNKHKSSKLDEMGAIRVAG
Length221
PositionHead
OrganismArabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Arabidopsis.
Aromaticity0.03
Grand average of hydropathy-1.586
Instability index38.15
Isoelectric point9.37
Molecular weight25685.51
Publications
PubMed=21478890

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26264
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.54|      21|      21|     132|     152|       1
---------------------------------------------------------------------------
  132-  152 (42.79/16.04)	HRDRDKDKDREHKKHKHKHKD
  154-  174 (38.75/13.84)	SKDKDKDKDRDRKKDKNGHHD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.06|      21|      21|      64|      84|       2
---------------------------------------------------------------------------
   64-   84 (34.56/25.72)	QLDQLIQSISQSRETNVRIQP
   86-  106 (36.50/27.50)	DIDELKESFQLNDMTPVELPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.77|      12|      21|     178|     190|       3
---------------------------------------------------------------------------
  178-  190 (19.11/11.22)	HSKKHHdKKRKHD
  201-  212 (21.66/ 8.38)	HKKNKH.KSSKLD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26264 with Med19 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) VVGDTEIRKGEGMQLDQLIQSISQSRETNVRIQPFDIDELKESFQLNDMTPVELPPAEKGAPTIPSKSKSESKDKDRKHKKHRDRDKDKDREHKKHKHKHKDRSKDKDKDKDRDRKKDKNGHHDSGDHSKKHHDKKRKHDGDEDLNDVQRHKKNKHKSSKLDEMGAIRVAG
51
221










Molecular Recognition Features






MoRF SequenceStartStop




1) KDKDRKHKKHRDRDKDKDREHKKHKHKHKDRSKDKDKDKDRDRKKDKNGHH
2) KHHDKK
3) KLDEMGAIRVA
123
181
210
173
186
220