<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26262

Description Predicted protein
SequenceMDLDDFRSVMDNAGVDVWTFIDTAILVASLDYGQELKRRRDNIVERLYATSMANKCRNCDFGGGGSVTEAAVGRVNGRVHEETEEEDEEAAAAAAAAEEVREKSVNVEDDDDFDPFAGLFDDEQKSILEIKEKLEDPDLSEESLVELLQNLEDMDITFQALQETDIGRHVNRVRKHPSNNVRRLAKQLVKKWKETVDEWVKFNQPGDLEPPSLIEQSISSNVADEDSPVQKALHNGNRQQVPDFGYSPVPQNGYSSSSKNSNITEPERKPRPVAAAAPPPRRESPSPAKPSRPSPSQQTIPRDKEHKEVDFDTARKRLQQNYRQAENAKKQRTIQVMDIHEIPKPKKGGFFPRKGGSSQGGRHW
Length364
PositionUnknown
OrganismArabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Arabidopsis.
Aromaticity0.06
Grand average of hydropathy-0.962
Instability index66.69
Isoelectric point5.16
Molecular weight40953.79
Publications
PubMed=21478890

Function

Annotated function 
GO - Cellular Component
cytosol	GO:0005829	IEA:EnsemblPlants
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26262
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.18|      16|      20|     121|     139|       1
---------------------------------------------------------------------------
  124-  139 (26.17/21.82)	QKSILEIKEKLEDPDL
  141-  156 (26.01/12.02)	EESLVELLQNLEDMDI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.46|      16|      20|     266|     281|       3
---------------------------------------------------------------------------
  266-  281 (30.20/16.48)	PERKPRPVAAAAPPPR
  287-  302 (30.27/16.54)	PAKPSRPSPSQQTIPR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.26|      20|      20|      70|      89|       4
---------------------------------------------------------------------------
   70-   89 (32.65/24.01)	AAVGRVNGRVHEET..EEEDEE
   91-  112 (25.61/17.13)	AAAAAAAEEVREKSvnVEDDDD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26262 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) VGRVNGRVHEETEEEDEEAAAAAAAAEEVR
2) WVKFNQPGDLEPPSLIEQSISSNVADEDSPVQKALHNGNRQQVPDFGYSPVPQNGYSSSSKNSNITEPERKPRPVAAAAPPPRRESPSPAKPSRPSPSQQTIPRDKEHKEVDFDTARKRLQQNYRQAENAKKQRTIQVMDIHEIPKPKKGGFFPRKGGSSQGGRHW
72
199
101
364










Molecular Recognition Features






MoRF SequenceStartStop




1) KQRTIQVMDIHEIPKPKKGGFFPRKGGSSQGGRH
2) QQNYR
330
319
363
323