<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26261

Description Uncharacterized protein
SequenceMNQQHPEEVSLGGGNIEAPATVEEEKEQVQHKQEETESTDPIVVVAEEKSADGEKEDDNTSTSNMEIDPVSPATVFCVKLKQPNSDLLHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSKANTPFWIPIHILIPERPTECAVFNVVADSPRDSVQFIEWSPISCPRALLIANFHGRITIWTQPTQGSANLVHDATSWQCEHEWRQDIAVVTKWLAGASPYRWLSSKPSSGTNAKSTFEEKFLSQSSESSARWPNFLCVCSVFSSGSVQLHWSQWPSNQGCTAPKWFSTKKGLLGAGPSGIMAADAIITDSGAMHVAGVPIVNPSTIVVWEVTPGPGNGLQATPKISTGSRVPPSLSSSSWTGFAPLAAYLFSWQEYLISEIKQGKKPTDQDSSDAISLSCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSNFGGQVPTQTVWVSRVDMSIPPTKDFKNHQVAAAGPSVDAPKEPDSGDEKANKVVFDPFDLPSDIRTLARIVYSAHGGEIAIAFLRGGVHIFSGPTFSPVENYQINVGSAIAAPAFSPTSCCSASVWHDAAKDCAMLKIIRVLPPALPRNQSKVDQSTWERAIVERFWWSLLVGVDWWDAVGCTQSAAEDGIVSLNSVIAVMDADFHSLPSTQHRQQYGPNLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALVNPSALVFEPWRVDGETITGINPEAMAVDPALVSSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAASAGTGSNRNIGTSPTQNASSPATPQVFPDKSLYHAAGQPTTTTTNFSGSTQAWMQGAIAKISSSNDGVSNSTANPISGSPTFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFLQRSSRFPQRNADVSSQKLQTGATSKLEEVNSAKPTPALNRIEEAQGFRGAQLGAGVKGIDENSARTTKMGSGNAGQGYTYEEVRVLFHILMDLCKRTSGLAHPLPGSQVGSGNIQVRLHYIDGNYTVLPEVVEAALGPHMQNMPRPRGADAAGLLLRELELHPPSEEWHRRNLFGGPGSEPEDMVLTDDASKLSNSVDLPDTSFSGICDGYNRVHRIWPRKRRMSERDAAFGSNTSVGLGAYLGIMGSRRDVVTATWKTGLDGVWYKVTLIHFP
Length1219
PositionTail
OrganismArabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Arabidopsis.
Aromaticity0.08
Grand average of hydropathy-0.214
Instability index45.11
Isoelectric point5.80
Molecular weight131624.69
Publications
PubMed=21478890

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
circadian regulation of gene expression	GO:0032922	IEA:EnsemblPlants
positive regulation of plant-type cell wall cellulose biosynthetic process	GO:2001011	IEA:EnsemblPlants
positive regulation of systemic acquired resistance	GO:1901672	IEA:EnsemblPlants
regulation of cell wall pectin metabolic process	GO:1902066	IEA:EnsemblPlants
regulation of ethylene-activated signaling pathway	GO:0010104	IEA:EnsemblPlants
regulation of jasmonic acid mediated signaling pathway	GO:2000022	IEA:EnsemblPlants
regulation of long-day photoperiodism, flowering	GO:0048586	IEA:EnsemblPlants
regulation of transcription, DNA-templated	GO:0006355	IEA:EnsemblPlants
response to osmotic stress	GO:0006970	IEA:EnsemblPlants
root development	GO:0048364	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26261
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.88|      13|      19|     758|     775|       1
---------------------------------------------------------------------------
  758-  770 (24.92/20.89)	VNPSALVFEPWRV
  778-  790 (22.96/ 6.60)	INPEAMAVDPALV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.42|      17|      21|     249|     269|       2
---------------------------------------------------------------------------
  234-  250 (26.04/10.59)	SSGTNAK.STF...EEKFLSQ
  251-  271 (20.38/19.91)	SSESSARwPNFlcvCSVFSSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.05|      18|      21|      22|      39|       4
---------------------------------------------------------------------------
   22-   39 (29.79/20.12)	VEEEKEQVQHKQEETEST
   45-   62 (29.27/19.64)	VAEEKSADGEKEDDNTST
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.38|      11|      19|     993|    1003|       7
---------------------------------------------------------------------------
  993- 1003 (19.23/13.08)	RGAQLGAGVKG
 1010- 1020 (20.15/14.14)	RTTKMGSGNAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.61|      15|      19|     281|     299|       8
---------------------------------------------------------------------------
  281-  297 (25.97/20.33)	PSnqGCTAPKWFSTKKG
  303-  317 (26.64/ 9.04)	PS..GIMAADAIITDSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     303.93|      85|     421|      91|     225|       9
---------------------------------------------------------------------------
   91-  187 (139.13/90.10)	MSVPElCRNFS..AV..AWCGKLNAIACASETCARIPSS...KAN....TPFWIPIHILIPERPTECAVfNVVADsprdsvqfIEWSpiSCPRALLIANFHGRITIWT
  513-  588 (101.17/11.11)	MSIPP.TKDFKnhQV..AAAGP..SVDAPKE.....PDSgdeKANkvvfDPFDLPSDIRTLAR....................IVYS..AHGGEIAIAFLRGGVHIFS
  869-  929 (63.63/41.01)	......TTNFS..GStqAW..MQGAIAKISSSNDGVSNS...TANpisgSPTFMPISINTGTFPGTPAV.RLIGD.................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     139.61|      37|     423|     189|     225|      10
---------------------------------------------------------------------------
  189-  225 (71.33/50.57)	PTQ.GSANLVHDATSWQ...CEHEWRQDIAV..VTKWLAGASP
  613-  643 (42.99/26.94)	PTScCSASVWHDAA............KDCAMlkIIRVLPPALP
  650-  675 (25.29/12.17)	...........DQSTWEraiVERFWWSLLVG..VDWWDA....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.90|      13|     124|     806|     818|      11
---------------------------------------------------------------------------
  806-  818 (26.05/18.00)	HFITRLRRYASFC
  931-  943 (26.85/18.77)	HFLHRLCQLLLFC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.37|      27|     423|     399|     427|      13
---------------------------------------------------------------------------
  399-  427 (41.37/28.93)	SDAISLSCSpvSNFSAYVSPEAAAQSAAT
  823-  849 (48.00/27.25)	SHAASAGTG..SNRNIGTSPTQNASSPAT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26261 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MNQQHPEEVSLGGGNIEAPATVEEEKEQVQHKQEETESTDPIVVVAEEKSADGEKEDDNTSTSNME
1
66










Molecular Recognition Features






MoRF SequenceStartStop




NANANA