<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26259

Description Uncharacterized protein
SequenceMDSDMEISLDRLPIKRLESIEENGAERFPSDVGYDDKRVSLIRRIDFAWALEEEDELKKKKQKKSSKDSAEQWKWKGMVENLQLAHQELSVIIDLIDTVQANDAVTVAGMTRPKPLPNEILSDLAVSTATKLQGYRNLGNYFKQSAKALEQKINREARFYGALIRLQRNWKVKRQRMLASNASNEGFTIDLSDSSLHDPTSGFRPSTLSTIRVDHDSAGMLAINVPQDSWYSLRFGFVGLNPIDNTNESDEHLDSTMGHDIPGTSEKQSASDDEYVKETHSLLREVHKSIFAEQVLFDMLNREAFNEGVGFNISGIRENFMEMSIGQGASLFVSLHPSGKNASIKKSESATLLIESSGRIEPAEGDYRLKKLGFPNRASYEIYLQQIFHEHAFGKAKDQPKSKSIRASNQTRKDSNSGLLDHFCLSLTHRIFSNRVLEHLESVVCKVPYLHLISHPTWNSRTSSWTVFMTVPPSIIPQGSSETQSPDGKRNLKMQFRTKVVVKDECISVEAECTPNVVGLLKSSSCNLFAMNKYECGVADLPVIILQQVASQIVCWLLEEARTVGTKASRDFLSLSLEIVEGERVSLVAQVNPEDAKGCISWWLVMENGSTEEREGVSESRKLLGHLSLDVLYSVLMDLINLCGTGRNALVS
Length652
PositionHead
OrganismArabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Arabidopsis.
Aromaticity0.07
Grand average of hydropathy-0.381
Instability index41.48
Isoelectric point5.89
Molecular weight73051.94
Publications
PubMed=21478890

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
production of miRNAs involved in gene silencing by miRNA	GO:0035196	IEA:EnsemblPlants
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26259
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     279.99|      93|     136|     195|     296|       1
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  195-  296 (138.55/103.60)	SLHdPT...SGFRPSTLSTIRVdhDSAGMLAinvPQDSWYSL.RFGF.......VGLNPIDNTNESDEHLDSTMGHDIPGTSEKQSASDDEYVkeTHSLLREVHKsIFAEQVL
  334-  437 (141.44/80.71)	SLH.PSgknASIKKSESATLLI..ESSGRIE...PAEGDYRLkKLGFpnrasyeIYLQQIFHEHAFGKAKDQPKSKSIRASNQTRKDSNSGLL..DHFCLSLTHR.IFSNRVL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.16|      16|     119|     177|     192|       3
---------------------------------------------------------------------------
  177-  192 (27.87/16.54)	MLASNASNEGFTIDLS
  299-  314 (29.30/17.72)	MLNREAFNEGVGFNIS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.52|      30|      49|     550|     579|       5
---------------------------------------------------------------------------
  550-  579 (51.27/29.82)	ASQIVCW..LLEEART...VGTKASRDFLS.LSLEI
  596-  631 (38.25/20.68)	AKGCISWwlVMENGSTeerEGVSESRKLLGhLSLDV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26259 with Med17 domain of Kingdom Viridiplantae
Unable to open file!