<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26253

Description Kinase family protein
SequenceMGDIGGEELVLDVDETIFVAVAEDVERSKTTVLWAARNFSGKKICLLYVHRTARAASWTHKKLVGGSFKKHDVKVIERAEKPKVDELMNSYLHLLSETEVQTDKLCIAGQNIEEGILELIARHKIKWLVMGAASDKHYSWKMTDLKSKKAIFVCKKAPDYCHIWFLCKGYLIFTRASNEGSNNRQTMPPLVQLDSDNETRKSEKLESSYMRRRLRYWRSLLEQDGEKDTGQLEREKVEPRATPHFSSGSSSSFGEPVGPEPISPELVDSDTLTTSNVKEKEREGDVARKVHRYDKAMHDIGQSERTVYGEAGKNWKEDASTTEALCKARALEGLCIKESSQRKRLEELLEKEKHEVKMVIEQNSGFMKELQMVQGQNLKLESQIRKLQDLEKEHGEKFDTAMELLKSFRQKRDEIRIDHENAVKEVNALRRLIKGETGEFSGSEMLEYSFMEINEATNEFDPSWKLGEGKYGSIYKGNLQHLQVAVKMLPSYGSLNHFEFERRVEILSRVRHPNLVTLMGACPESRSLIYQYIPNGSLEDCFSSENNVPALSWESRIRIASEICSALLFLHTNIPCIIHGNLKPSKILLDSNLVTKVNDYGISQLIPIDGFDKSDPHVDPHYFVSREMTLESDIYAFGIILLLLLTRRPVSGILRDVKCALENDNISAVLDNSAGAWPIARGKKLANVAIRCCKKNPMNRPDLAVVLRFIDRMKAPEVPSSETSYSDQKVPRRPPSHYLCPIFQEVMKDPLIAADGFTYEAEAIREWLANGHDTSPMTNLKMEDCNLIPNHALHLAIQDWQNQW
Length804
PositionTail
OrganismArabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Arabidopsis.
Aromaticity0.07
Grand average of hydropathy-0.498
Instability index41.79
Isoelectric point6.36
Molecular weight91585.56
Publications
PubMed=21478890

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
plasma membrane	GO:0005886	IEA:EnsemblPlants

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26253
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     305.81|      96|     115|     536|     638|       1
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  536-  638 (160.10/129.10)	GSLED..CFSSENNVPALSWESriRIASEICSALLFLHTNIPCIIHGNL.KPskillDSNLVTKVNDYGISQLIPIDGFDKSD...PHVDP.HYF..VSREMTLESDIYAFG
  652-  756 (145.71/101.57)	GILRDvkCALENDNISAVLDNS..AGAWPIARGKKLANVAIRCCKKNPMnRP.....DLAVVLRFIDRMKAPEVPSSETSYSDqkvPRRPPsHYLcpIFQEVMKDPLIAADG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     214.92|      57|     282|      69|     126|       4
---------------------------------------------------------------------------
   70-  126 (90.50/49.78)	KHDVKVIERAEKPKVDEL.MNSYLHLLSETEV.....QTDKLCIAGQNIE.......EGILELIARHKIK
  298-  351 (57.88/28.84)	.HD...IGQSERTVYGEA.GKNWKEDASTTEAlckarALEGLCIKESSQR.......KRLEELLEK....
  353-  411 (66.53/31.65)	KHEVKMVIEQNSGFMKELqMVQGQNLKLESQI.....R..KL....QDLEkehgekfDTAMELLKSFRQK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.16|      11|      17|     433|     443|       5
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  433-  443 (19.84/11.40)	IKGETGEFSGS
  453-  463 (20.32/11.84)	INEATNEFDPS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26253 with Med32 domain of Kingdom Viridiplantae
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