<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26251

Description Uncharacterized protein
SequenceMEGNTNWKPNEQGGDSAANNAIDWRSQHEPELRKKVLSKIVEKLKEYCPTHEEYKIIDIASKFEEKFYSIANDKTPTSQQWLPQNTQSNLNIPGSSGLPSQAPITVSGAQNQQVQPPQQQHHPQSLLKQPIQQSIPQSCLSSSSQQTSMQQNSQSLPRHQFPTQRVSSSHQQQMVLPSQEQKRQEQEQLISQLMNVQQNHPTSRQNNGAQQGSFRVSSSQQNNNLQNMHPQRLNNASALPLQQQQNMPRGQQVGQSQPMMSQQYRAQHPMQQLPQNRSSQQHFDSVQNNTNRFQEGSSLRQTQNLTDQQNQQHQLQRAPLANPSTSQDSTGKTVNANAGDWQEETYQKIKHLKEMYLPVLSLMLQRVKEKLRQVESLPPQKLQSQSIEKLKAGKSSIEQLIFFLNVHKSTVSEKHRDKFSLFENHILKFTKSHTMVPRPTQQQQGQFPPSQSHQTALQSQSPQVHVSQSLDNDQMSSRLMPISQTAASSSIMPHSLQTRPKLEPRDENNIMASSGSVMLPSGKQNQQAVQSNISLVQSLQQQKQFHHRQMQPQQQLQQPQLANQQHQIPTSQQTNEMNDVRMRQRVNIKAGLLQQQVSSSPRQAPKPQSNVSSPQIHHHSSPQLVDQQILPAVNKTETPLMSGGSPFVAPSPIPGDPEMPISVESPVSGVEIKSTLDSSSKLGTEEHPPLSVPPEPITERPIDRLIKAFQAASPKSLAESVSEISAVISMVDRFAGSFHSGGGSRAGLGEDLSERTRNFSTHEETNPSKRMKRSVSIVPRDMSSQIDSYEQFSSLESEVDSTASSGSKVNNIAHGCALLQEIKETNGRLVETVVEICDEDASGTIVTCTYSPVALSATFKDHYKSGKIVSLSKLLLFLPMFSFLMSPMFHAVTDSTVTLTSSYGLSINVHKYEDLSARTRSRFSLSMTELSEPGSLKEIAKTWNDCARATMVEYAERHGGGTFSSKYGAWETVLRAS
Length977
PositionTail
OrganismArabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Arabidopsis.
Aromaticity0.05
Grand average of hydropathy-0.803
Instability index72.93
Isoelectric point8.89
Molecular weight109068.53
Publications
PubMed=21478890

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:EnsemblPlants
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26251
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.25|      19|      22|     583|     603|       1
---------------------------------------------------------------------------
  438-  458 (19.86/ 8.58)	RPTQQQQGQFppSQSHQTALQ
  547-  565 (26.39/ 7.06)	HRQMQPQQQL..QQPQLANQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     583.96|      81|      81|     151|     231|       2
---------------------------------------------------------------------------
   84-  147 (68.19/22.85)	.......QNTQSnlnIPgS.....................SGLPSQapiTVSGAQNQ....Q.VQPPQ.QQHHPQS.L......LKQ.......PIQQSI.........................PQSC..LS...............SSSQQ.T...
  148-  226 (126.34/49.40)	....SmqQNSQS...LP.R.....................HQFPTQ...RVSSSHQQ....QMVLPSQEQKRQEQEQL......ISQ..L...MNVQQNH.........................PTSR..QNNG.....AQQGSFRVSSSQQNNNLQ
  227-  291 (85.31/30.66)	NMHPQrlNNASA...LP.L....................................QQ....QQNMPRGQQVGQSQP.M......MSQ..Q...YRAQ..H.........................PMQQlpQNRS.....SQQ.HF..DSVQNNTN..
  292-  353 (61.63/19.85)	.........................................RF..Q...EGSSLRQT....QNLTDQQNQQHQLQR.........AP..L...AN..............................PSTS..QDSTgktvnANAGDWQEETYQKIKHLK
  354-  428 (73.65/25.34)	EMY............LP.V.....................LSLMLQ...RVKEKLRQ....VESLPPQKLQSQSIEKLkagkssIEQ..LiffLNV...H.........................KSTV..SEK.......HRDKFSLF...ENHILK
  434-  497 (48.37/13.80)	TMVP...............rptqqqqgqfppsqshqtalqSQSPQV...HVSQS..................LDNDQM......SSR..L...MPI............................................SQTAA...SSSIMPHSLQ
  504-  578 (43.82/11.72)	................P.R.....................DENNIM...ASSGS........VMLPSGKQNQQAVQSN......ISL..V...QSLQQQKqfhhrqmqpqqqlqqpqlanqqhqiPT.......................SQQTNEMN
  579-  651 (76.64/26.71)	DVRMR..QRVN.....I.K.....................AGLLQQ...QVSSSPRQapkpQSNVSSPQIHHHSSPQL......VDQqiL...PAV..NK.........................TETP..LMSG........GSPFVAPS.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.68|      23|      26|     927|     949|       3
---------------------------------------------------------------------------
  927-  949 (41.06/28.55)	MTELSE...PGSLKEIAKTWNDCARA
  951-  976 (35.62/23.81)	MVEYAErhgGGTFSSKYGAWETVLRA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      93.26|      22|      28|     702|     723|       4
---------------------------------------------------------------------------
  702-  722 (27.11/13.94)	........I.DRLIKAFQA..ASP.KSLAESVS
  723-  753 (21.21/ 9.23)	EisavismV.DRFAGSFHSggGSR.AGLGEDLS
  754-  776 (22.64/10.37)	E........rTRNFSTHEE..TNPsKRMKRSVS
  781-  799 (22.30/10.10)	D.......M.SSQIDSYEQ..FS...SLESEV.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.47|      17|      26|      38|      54|       6
---------------------------------------------------------------------------
   38-   54 (31.22/17.21)	SKIVEKL....KEYCPTHEEY
   61-   81 (25.25/12.73)	SKFEEKFysiaNDKTPTSQQW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.98|      17|      18|     890|     906|       8
---------------------------------------------------------------------------
  890-  906 (27.56/20.62)	HAVTDSTVTLTSSYGLS
  910-  926 (28.43/21.54)	HKYEDLSARTRSRFSLS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26251 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HSGGGSRAGLGEDLSERTRNFSTHEETNPSKRMKRSVSI
2) NDKTPTSQQWLPQNTQSNLNIPGSSGLPSQAPITVSGAQNQQVQPPQQQHHPQSLLKQPIQQSIPQSCLSSSSQQTSMQQNSQSLPRHQFPTQRVSSSHQQQMVLPSQEQKRQEQEQLISQLMNVQQNHPTSRQNNGAQQGSFRVSSSQQNNNLQNMHPQRLNNASALPLQQQQNMPRGQQVGQSQPMMSQQYRAQHPMQQLPQNRSSQQHFDSVQNNTNRFQEGSSLRQTQNLTDQQNQQHQLQRAPLANPSTSQDSTGKTVNANAGDWQEET
3) TKSHTMVPRPTQQQQGQFPPSQSHQTALQSQSPQVHVSQSLDNDQMSSRLMPISQTAASSSIMPHSLQTRPKLEPRDENNIMASSGSVMLPSGKQNQQAVQSNISLVQSLQQQKQFHHRQMQPQQQLQQPQLANQQHQIPTSQQTNEMNDVRMRQRVNIKAGLLQQQVSSSPRQAPKPQSNVSSPQIHHHSSPQLVDQQILPAVNKTETPLMSGGSPFVAPSPIPGDPEMPISVESPVSGVEIKSTLDSSSKLGTEEHPPLSVPPEPITERPIDRLI
739
72
430
777
345
706










Molecular Recognition Features






MoRF SequenceStartStop




1) RPIDRLIKAF
700
709