<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26249

Description Kinase (Fragment)
SequenceMWMPKNNNVGVKEGGSSGIVAVAIDKDKSSQHALKWAVDHLLQRGQSVILVHVKLRPSPLNNSPSLHASSAKLSQDSSLVCRDPEGISKELFLPFRCFCTRKDIQCQDVLLEESDVAKALVEYVNQAAIEVLVVGSSSKGGFLRFNKPTDIPGNITKNAPDFCTVYIISKGKIQTMRSASRSAPMTAPLRSPVQPPSLKPPQPMPSTFANSMRAARRSFESNQRRSVEDQQRRSMEDQQRRSMEDQSESFRSPFTRRGNGKSYGDLSVPESDISFISSGRPSIDRIFPSLYDNNDPTRTPPRLSNFSDMDYSSNLDQSSNYGRRSVDLNSPTDFESERFSSASQSIDDVEAEMRRLKLELKQTMEMYSTACKEALTAKQKATELQRWKLEEERKLEEARHAEEAALAIAEKEKAKSKAAMEAAEAAQRIAELEAKKRVNAEMKALKESEEKTKALTALANSDVRYRKYSIEEIELATEFFAEKYKIGEGGYGPVYKCYLDHTPVAVKVLRPDAAQGRSQFQQEVEVLSCIRHPNMVLLLGACPECGCLVYEFMANGSLEDRLFRLGNSPPLSWQMRFRIAAEIGTGLLFLHQAKPEPLVHRDLKPGNILLDRNFVSKISDVGLARLVPPSVADTVTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGIMFLQLITAKPPMGLTHYVERALEKGTLADLLDPAVSDWPMEDTEEFAKLALKCAELRRKDRPDLAKVILPELNRLRTLADESSHSVVVSNSLVPSPTGSQSSLKLEHMSGASISVPQ
Length788
PositionTail
OrganismArabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Arabidopsis.
Aromaticity0.06
Grand average of hydropathy-0.460
Instability index57.76
Isoelectric point7.52
Molecular weight87762.91
Publications
PubMed=21478890

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26249
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.67|      12|      82|     586|     598|       1
---------------------------------------------------------------------------
  586-  598 (19.53/16.29)	GLLFLH..QAKPePL
  670-  683 (20.14/11.27)	GIMFLQliTAKP.PM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     197.89|      52|      97|     196|     247|       2
---------------------------------------------------------------------------
  196-  247 (93.52/46.96)	PSLKPPQPMPSTFANS..MRAARR..SFE...........SNQ..RRSVEDQQRRSMEDQQRRSMEDQS
  281-  345 (56.81/26.08)	PSI..DRIFPSLYDNNdpTRTPPRlsNFSdmdyssnldqsSN.ygRRSVDLNSPTDFE.SERFSSASQS
  358-  394 (47.57/20.83)	LELKQTMEMYST........ACKE..ALT...........AKQ..KAT..ELQRWKLEEERK.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.04|      33|      36|     395|     428|       3
---------------------------------------------------------------------------
  395-  428 (46.60/36.40)	LEEARH..AEEAALAIAEkEKAKSKAAMEAAEAAQR
  432-  466 (45.44/30.27)	LEAKKRvnAEMKALKESE.EKTKALTALANSDVRYR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.53|      20|      72|     614|     633|       7
---------------------------------------------------------------------------
  614-  633 (34.18/24.43)	FVSKISDVG.LARLVPPSVAD
  688-  708 (29.35/19.85)	YVERALEKGtLADLLDPAVSD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.02|      28|     706|      46|      74|       8
---------------------------------------------------------------------------
   46-   74 (45.22/36.84)	QSVIlVHVKLRPSPLNNSPSL...HASSAKLS
  755-  785 (44.80/31.21)	HSVV.VSNSLVPSPTGSQSSLkleHMSGASIS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26249 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DRIFPSLYDNNDPTRTPPRLSNFSDMDYSSNLDQSSNYGRRSVDLNSPTDFESERFSSASQSI
2) RSASRSAPMTAPLRSPVQPPSLKPPQPMPSTFANSMRAARRSFESNQRRSVEDQQRRSMEDQQRRSMEDQSESFRSPFTRRGNGKSYGDLSVPESDISF
284
177
346
275










Molecular Recognition Features






MoRF SequenceStartStop




1) IDRIFPSLY
283
291