<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26248

Description Structural constituent of ribosome
SequenceMAVAPSDFQPTLWDSVTSLIRSTQEKNVDPLQWALQLRLTLASAGISLPSPDLAQFLVTHIFWENHSPLSWKLLEKAISVNIVPPLLVLALLSPRVIPNRKLHPAAYRLYMELLKRHAFSFMPQIRAPGYHKTMNSIDDILHLSETFGVQDQEPGSILLAFVFSIIWQLVDASLDEEGLLELTSNKRSKWPSRPHDMEIDGLENSVKRNENHDALEKANTEIAIELIQDFLQNKVTSRILHLASQNMESRTIPRGEFHAIVSSGSKLALNSDSALWLPIDLFFEDIMDGTQAAAASAVENLTGLVKALQAANSTTWHDAFLALWLAALRLVQRENLCLRYCFIIHMMEILSEERDPIEGPVPRTDTFLCVLLSVTPLAVANIIEEEESQWIDQTSSSPSNQCKEKKGKCRQGLVNSLQQLGDYESLLTPPRSVQSVANQAAAKAVLFISGITNGNGSYENTSMSESPSGCSGNMRHLIVEACISRNLLDTSAYLWPGFVIGGTNQVPEGIAGNISCWSLAMKGSPLTPSLTNSLITTPASSLAEIEKMYEVATTGSEDEKIAAASILCGASLFRGWSIQEHVIIFIVTLLSPPAPADLSGSYSHLISSAPFLNVLLVGISPIDCVHIFSLHGVVPLLAGALMPICEAFGSGIPNITWTLPTGEVISSHAVFSTAFTLLLRLWRFDHPPLDYVLGDVPPVGPQPSPEYLLLVRNCRLECFGKSPKDRMARRRFSKVINISVDPIFMDSFPRLKQWYRQHQECMASILSELKTGSPVHHIVDSLLSMMFKKANKGGSQSLTPSSGSSSLSTSGVDDSSDQLKLPAWDILEAAPFVLDAALTACAHGSLSPRELATGLKILADFLPATLGTMVSYFSSEVTRGLWKPVSMNGTDWPSPAANLASVEQQIEKILAATGVDVPRLPADGISAATLPLPLAALVSLTITYKLDKATERFLVLVGPALDSLAAACPWPCMPIVTSLWTQKVKRWSDFLIFSASRTVFHHNRDAVIQLLRSCFTCTLGLTPTSQLCSYGGVGALLGHGFGSRYSGGISTAAPGILYIKVHRSIRDVMFLTEEILSLLMFSVKSIATRELPAGQAEKLKKTKDGSRYGIGQVSLSLAMRRVKLAASLGASLVWISGGLNLVQALIKETLPSWFISVHGEEDELGGMIPMLRGYALAYFAILSSAFAWGVDSSSPASKRRPRVLWLHLEFMVSALEGKISLGCDWATWQAYVTGFVSLMVQCTPAWVLEVDVEVIKRLSKSLRQWNEQDLALALLCAGGLGTMGAATELIVETCHQH
Length1297
PositionTail
OrganismArabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Arabidopsis.
Aromaticity0.07
Grand average of hydropathy0.155
Instability index50.03
Isoelectric point6.02
Molecular weight141447.74
Publications
PubMed=21478890

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
phenylpropanoid metabolic process	GO:0009698	IEA:EnsemblPlants
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26248
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     398.08|      96|     103|     528|     623|       1
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  413-  515 (99.51/63.37)	..LVNSLqqLGDYESLLTPPRSVQSVANQAAAKAVLFISGITNGN..GSYENTSMSE.............SPSGCSGNMRHLIVEACISRNLLdtsaylwpgfviggtnqvpEGIAgNIS
  528-  623 (154.84/103.55)	PSLTNSL..ITTPASSLAEIEKMYEVATTGSEDEKIAAASILCGA..SLFRGWSIQEHVIIFIVTLLSPPAPADLSGSYSHLISSAPFLNVLL...................VGIS.PID
  635-  725 (143.74/95.48)	PLLAGAL..MPICEAFGSGIPNITWTLPTG...EVISSHAVFSTAftLLLRLWRFDHPPLDYVLGDVPPVGPQP.SPEYLLLVRNC...RLEC...................FGKS.PKD
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     107.39|      44|      56|     863|     918|       2
---------------------------------------------------------------------------
    5-   49 (44.32/21.68)	PSDFQPTLWDSVTSLIRSTQEknvdplqwalQLRLTLASAGISLP................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
  863-  871 (-1.04/ 9.00)	.............................................spdlaqflvthifwenhsplswkllekaisvnivppllvlallsprvipnrklhpaayrlymellkrhafsfmpqirapgyhktmnsiddilhlsetfgvqdqepgsillafvfsiiwqlvdasldeeglleltsnkrskwpsrphdmeidglensvkrnenhdalekanteiaieliqdflqnkvtsrilhlasqnmesrtiprgefhaivssgsklalnsdsalwlpidlffedimdgtqaaaasavenltglvkalqaansttwhdaflalwlaalrlvqrenlclrycfiihmmeilseerdpiegpvprtdtflcvllsvtplavaniieeeesqwidqtssspsnqckekkgkcrqglvnslqqlgdyeslltpprsvqsvanqaaakavlfisgitngngsyentsmsespsgcsgnmrhliveacisrnlldtsaylwpgfviggtnqvpegiagniscwslamkgspltpsltnslittpasslaeiekmyevattgsedekiaaasilcgaslfrgwsiqehviifivtllsppapadlsgsyshlissapflnvllvgispidcvhifslhgvvpllagalmpiceafgsgipnitwtlptgevisshavfstaftlllrlwrfdhppldyvlgdvppvgpqpspeylllvrncrlecfgkspkdrmarrrfskvinisvdpifmdsfprlkqwyrqhqecmasilselktgspvhhivdsllsmmfkkankggsqsltpssgssslstsgvddssdqlklpawdileaapfvldaaltacahgslsprelatglkiladflPA..........TLGTMVS
  884-  939 (64.12/33.78)	PVSMNGTDWPSPAANLASVEQ..........QIEKILAATGVDVP...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................rlPAdgisaatlplPLAALVS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26248 with Med33 domain of Kingdom Viridiplantae
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