<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26245

Description Kinase family protein
SequenceMKAQKGSSKKKSANSGLVAVAVDNNKGSQHALKWAADHLVSKGQTIILLHVILRSPSDSGEITAEKHKQAENLFVTFHCYCSRKEIQCLDVTLEDDNIVKSLAEYVSSGVIENLVLGAPSRHGFMRKFKISDTPSNVAKAAPDFCTVYVISKGKISSVRYASRAAPYRSPLMGQIENHSEIINYEKFKNTMSFRDRAPARSSTASSIEDYGKSPMARTSNYANSFFELEDSENDISFVCSGRPSTTSSGRPSTSTGRSDISFVSSGRPSTSTTGSPSFIYDFPDSGLTPRKSTSSGHSMRLGIRFNDTNIQHDFSFVSQDSGRSSCSCSPQNLEEVEAEMRRLKQELKHAIDMYGSACREALAAKQEAKELQRQKIEEEGWVQEGQLSEKSTKSIVEKERAHKAAMEASETAGKIADLETQRRAIEAAGSFSDSSLRYRRYVIGEIEEATNSFDKANKIGEGGYGPVYKGYLDHTPVAIKVLRADAVQGRSQFQREVEVLSCIRHPHMVLLIGACPEYGVLVYEYMAKGSLADRLYKYGNTPPLSWELRFRIAAEVATGLLFLHQTKPEPIVHRDLKPGNILIDQNYVSKIGDVGLAKLVPAVAENVTQCHVSSTAGTFCYIDPEYQQTGMLGVKSDVYSFGILLLELLTAKRPTGLAYTVEQAMEQGKFKDMLDPAVPNWPVEEALSLAKIALKCAQLRRKDRPDLGKEVLPELHRLRARADTNMEWMMFNLSRGRLTPNHSQVSLPPVDELSVCSDSSYTHSSTLSDTEKNSDQNEED
Length780
PositionTail
OrganismArabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Arabidopsis.
Aromaticity0.07
Grand average of hydropathy-0.464
Instability index46.73
Isoelectric point6.87
Molecular weight86266.30
Publications
PubMed=21478890

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein serine/threonine kinase activity	GO:0004674	IEA:EnsemblPlants

GO - Biological Process
protein autophosphorylation	GO:0046777	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26245
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      82.49|      15|      15|     248|     262|       1
---------------------------------------------------------------------------
  248-  262 (32.56/17.49)	SGRPSTSTGRS..............DISF
  265-  278 (29.70/15.35)	SGRPSTSTTGS..............P.SF
  288-  316 (20.23/ 8.27)	TPRKSTSSGHSmrlgirfndtniqhDFSF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     214.95|      68|     373|     330|     399|       2
---------------------------------------------------------------------------
  330-  399 (105.28/67.91)	PQNLEEVEAEMRRLKQELKHAID.MYGSACREALAAKQEAKELQrqKIEEEGWVQEGQLSEKSTKSIVEKE
  705-  773 (109.67/65.16)	PDLGKEVLPELHRLRARADTNMEwMMFNLSRGRLTPNHSQVSLP..PVDELSVCSDSSYTHSSTLSDTEKN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.80|      15|      15|     408|     422|       3
---------------------------------------------------------------------------
  408-  422 (25.21/17.54)	ASETAGKIAD..LETQR
  424-  440 (21.59/13.94)	AIEAAGSFSDssLRYRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.41|      28|     373|     121|     166|       4
---------------------------------------------------------------------------
   97-  125 (43.65/40.57)	NIVKSLAEY.....VSSGVIENLVL...GAPsRHGFM
  136-  172 (32.76/32.25)	NVAKAAPDFctvyvISKGKISSVRYasrAAPyRSPLM
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26245 with Med32 domain of Kingdom Viridiplantae
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