<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26243

Description Kinase family protein
SequenceMVKMVNGERRDESVAIAIDRDKGSQAALKWAVDNLLTPGETLTLVHVRVKQTLANNGTQPNKSGDDVKELFLPFRCFCTRKDINCEEVVLEDDDAAKGIIEYVQENAIDILVLGASKMTLLKRFKAVDVTSAVMKGAPNFCTVYAISKGKISSVRSATSSPPPLCTIRPQLPARASNASNNNSSPRTERRLQSVESTQDEIEMIKCPYLRKEYDQGTYQASVTDSDLSFMSSDRPSVDWFFPTSRLSVSSEFEDNRDSFATSSSSSDKQSIDLGSSYSAFSTSSQESGRLSSLSMHSQDDVESEMRRLKLELKYTMDMYSSACKEAIAAKKTTTELHKWKEERKHKLEEAILAKEAALAIAENEKAKSRAAMEALAAAHRMAEIEAQKRKQIETAALREVDDNNKEMHSLTHSDRMYRKYTIEEIEEGTENFSDSHKIGEGGYGPVYKGILDYTPVAIKVVRPDATQGRSQFQQEVEVLTCIRHPNMVLLLGACAEYGCLVYEYMANGSLEDRLLRRGNSPVLSWQLRFRIAAEIATSLNFLHQLKPEPLVHRDLKPANILLDQHMVSKISDVGLARLVPAPLVDDIASHYRMTSAAGTLCYIDPEYQQTGMLGTKSDIYSFGIMLLQILTAKPPMGLTSQVERAIEEGNFSEVLDPVVADWPLEEALVLAKLGLQCAALRRKDRPDLGNVVLPELKRLMDLAEKNMLIT
Length710
PositionTail
OrganismArabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Arabidopsis.
Aromaticity0.06
Grand average of hydropathy-0.366
Instability index52.28
Isoelectric point5.67
Molecular weight79089.18
Publications
PubMed=21478890

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process
pollen tube growth	GO:0009860	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26243
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.73|      17|      22|     259|     275|       1
---------------------------------------------------------------------------
  241-  257 (25.62/13.50)	FPTSRLSVSS.EFEDNRD
  259-  275 (28.02/15.42)	FATSSSSSDK.QSIDLGS
  280-  297 (23.09/11.49)	FSTSSQESGRlSSLSMHS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      71.37|      20|      22|     341|     362|       2
---------------------------------------------------------------------------
  324-  338 (15.14/ 6.66)	.......KEAIAAKKTTTELHK
  341-  362 (25.67/26.99)	EerKHKLEEAILAKEAALAIAE
  364-  383 (30.56/23.47)	E..KAKSRAAMEALAAAHRMAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.83|      21|      21|     141|     161|       3
---------------------------------------------------------------------------
  141-  161 (35.21/22.75)	CTVYAISKGKISSVRSATSSP
  165-  185 (37.63/24.82)	CTIRPQLPARASNASNNNSSP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26243 with Med32 domain of Kingdom Viridiplantae
Unable to open file!