<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26242

Description Uncharacterized protein
SequenceMEGENTTEQPYTTAASSGQSIFVRPPPIAPVLATASNVSQSEQPSMSIASTGFVSQSVPSSVAAQWASNAAASSNVNPIPQASPMLANAPFGRPGKLAPPGLMTSPPAFPGSNPFSTTPRPGMSTGPAQINPSIHPHMYPPYHSLPTMPGTPQGMWLQPPLMGGIPRAPFISHPTTFPGSYPFPVRGISPNLPYSGSHPLGAIPMGSVGNVHALPGHQLDISPGQKTEALSGIDDRAGSQLVGNQLDAWTAHKSEAGVVYYYNSVTGHSTYEKPPGFGGEPDKVPVQPIPVSMEDLPGTDWALVSTNDGKKYYYNNKTKVSSWQIPAEVKDLGKKPEERAMESVASVPSADFTEKGSDLSSLSAPAISNGGRDAASLKTTNFGSSALDLVKKKLHDSGVPVSSTTTSEANGGKASEVTPSGESGNGTGKIKDAPGAGELSDSSSDSEDEDSGPSKEECFKQFKEMLKERGIAPFSKWEKELPKIIFDPRFKAIPSHSVRRSLFEQYVKTRAEEERREKRAAHKAAIEGFRQLLDEASTDIHQHTDYRAFKKKWGNDLRFEALERKEREALLNERVLSLKRTAEQKAQEIRAAAASDFKTMLHEREVSLNSHWSKVKDSLRNEPRYRSVAHEDREFFYYEYIAELKAAQRGDDHEMKARDEADKLRERERELRKRKEREVQEVERVRQKIRRKEASSSYQALLVEKIRDPEASWTESKPKLERDPQKRASNPDLDPADKEKLFRDHIKTLYERCVHDFKALLVEALSSEAASQQTEDGKTVLDSWSAAKQVLKPDIRYSKMPRRDREVLWRRYAEDIWRKQKQENYQEEKQRDYKT
Length835
PositionUnknown
OrganismArabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Arabidopsis.
Aromaticity0.07
Grand average of hydropathy-0.824
Instability index46.33
Isoelectric point8.08
Molecular weight92735.58
Publications
PubMed=21478890

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26242
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      65.07|      20|      26|     159|     180|       1
---------------------------------------------------------------------------
  119-  145 (14.98/ 6.47)	P..rPGMstgpaqinpsihPHMY...P..PYHSL
  146-  173 (29.46/17.34)	PtM.PGT.....pqgmwlqPPLMGGIPRAPFISH
  194-  210 (20.64/ 6.29)	..Y.SGS............HPL.GAIPMGS.VGN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     420.76|      67|      68|     502|     568|       2
---------------------------------------------------------------------------
  457-  522 (60.05/41.19)	....ECFKQfkeMLKE...RGI..A......PF.SKWE.......KELpkiifdpRFKA....IPSHSvRRsLFEQYV.....KTRAEEERREKRAAH
  523-  591 (87.17/63.99)	KAAIEGFRQ...LLDEA.STDI..HQHTDYRAFKKKWG.......NDL.......RFEA....LERKE.REaLLNERV..lslKRTAEQKAQEIRA..
  592-  653 (83.90/61.24)	.AAASDFKT...MLHER.EVSL..NSH..WSKVKDSLR.......NEP.......RYRS....VAHED.REfFYYEYI........AELKAAQRGDDH
  654-  691 (50.02/32.76)	EMKAR.........DEA.D.KL..RERE..R...............EL.......R........KRKE.RE..............VQEVERVRQKIRR
  692-  755 (76.89/55.35)	KEASSSYQA...LLVEK.IRD....PEASWTESKPKLE.......RDP.......QKRAsnpdLDPAD.KEkLFRDHI.....KTLYE......RCVH
  756-  833 (62.72/43.44)	.....DFKA...LLVEAlSSEAasQQTEDGKTVLDSWSaakqvlkPDI.......RYSK....MPRRD.REvLWRRYAediwrKQKQENYQEEKQRDY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.85|      26|      51|     249|     274|       3
---------------------------------------------------------------------------
  249-  274 (49.33/38.01)	WTAHKSEAGVVYYYNSVTGHSTYEKP
  301-  326 (49.52/38.19)	WALVSTNDGKKYYYNNKTKVSSWQIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     123.74|      34|      35|       9|      43|       4
---------------------------------------------------------------------------
   10-   34 (38.54/23.67)	...........PYTTAASSG...QSIFVRPPPIAPVLAT
   35-   68 (48.41/30.08)	ASNVSQSEQ..PSMSIASTGfvsQSV...PSSVAAQWAS
   73-   99 (36.79/20.84)	SSNVNPIPQasPMLANAP........FGRPGKLAP....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.59|      22|      25|     408|     429|       5
---------------------------------------------------------------------------
  408-  429 (38.16/18.95)	EANG.GKASEVTP.SGESGNGTGK
  432-  455 (29.43/13.00)	DAPGaGELSDSSSdSEDEDSGPSK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.89|      24|      27|     345|     371|       9
---------------------------------------------------------------------------
  345-  371 (34.92/28.04)	ASVPSADFtekGSDLSSLSAPAISNGG
  375-  398 (37.97/22.49)	ASLKTTNF...GSSALDLVKKKLHDSG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26242 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IPAEVKDLGKKPEERAMESVASVPSADFTEKGSDLSSLSAPAISNGGRDAASLKT
2) KLHDSGVPVSSTTTSEANGGKASEVTPSGESGNGTGKIKDAPGAGELSDSSSDSEDEDSGPSKEECFK
3) NAAASSNVNPIPQASPMLANAPFGRPGKLAPPGLMTSPPAFPGSNPFSTTPRPGMSTGPAQINPSIHPHMYPPYHSLPTMPGTPQGMWLQP
325
393
69
379
460
159










Molecular Recognition Features






MoRF SequenceStartStop




1) FFYYEYIA
2) LKPDIRY
3) LPKIIFDPRFK
635
791
481
642
797
491