<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26241

Description FF domain-containing protein
SequenceMANNHQYPGIQPFQHPNASSIDLPRGFAPPMNFQFHPTIQAPQSEQVARLSSQNFQCVGRGGTVLNIGYPPQSYAPQLLQSMHHSHERPSQLNQVQVQHVPLGPPTLVSQPNVSIASGTSLHQPYVQTPDISMPGFGGPRALFSYPSATSYEGSRAPPQVTGPSSHSQAQHRASISQTTAQSSILNPTFEQPKEAFSKPIPSQEALTDWVEHTSADGRKYFFNKRTKKSTWEKPVELMTLFERADARTDWKEHSSPDGRKYYYNKITKQSTWTMPEEMKIAREQAEKASLQGPHAEGIIDVFKVLTRSDTASTAAPTSLPSQTSTSDVSEKLALTSDWKQPASVPGSSSPVENVDRVQMIADETSQLCDTSETDGPSVPQGSGTGPEESQKPMVESERVESQTEEKQINQENFSFNNKSEAGDVFKSLLKSANVGSDWTWEQAMREIINDRRYGALRTLGERKQAFNEFLLQTKRAAEEERLARQRKRYEDFKRMLEECVELTPSTRWSKAVTMFEDDERFKALEREKDRRNIFEDHVSELKEKERVKALEDRKRNIIEYRRFLESCNFIKPNSQWRKVQDRLEVDERCSRLEKIDQLEIFQEYLGDLEREEEEKKKIQKEELKKAERKHRDEFRGLIEEHIATGELTAKTLWRDYLMKVKDLPVYSTIASNSSGATPKDLFEDAVEDLKKRYHELKSQIKDVLKLRKVNLSAGSAFDEFKVSISEDIGFPPIPDVRLKVVFDDLLERAKEKEEKEARKQTRQTEKLVDMLRSFKDITASSSWEESKHLVEGSEKCRTIGDESFRKQTFEDYVSLLKEQSKRIKQNKKVPEDVREEHDKGRDKYGREKDRVRERDSDDHHKKGAAGNYNHDMNESHGKERRRSGRDSHNRHRERHTSVKENDTDHFKESQKAGGGHKKSRHQRGLVPEAEVEGRIKRRRKEEESEHTKEEELEDGECGRY
Length960
PositionUnknown
OrganismArabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Arabidopsis.
Aromaticity0.07
Grand average of hydropathy-1.090
Instability index53.28
Isoelectric point6.63
Molecular weight110490.61
Publications
PubMed=21478890

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26241
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     180.18|      37|      38|     198|     234|       1
---------------------------------------------------------------------------
  157-  192 (40.47/22.04)	...PPQ..VTGPSSHSQAQHRAS.ISQTTAQSsilnpTFEQP
  198-  234 (70.05/43.91)	KPIPSQEALTDWVEHTSADGRKYFFNKRTKKS.....TWEKP
  239-  275 (69.66/43.62)	TLFERADARTDWKEHSSPDGRKYYYNKITKQS.....TWTMP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     187.17|      37|      38|     832|     868|       2
---------------------------------------------------------------------------
  792-  812 (24.36/ 8.59)	..................GSEKCR...T...IGDESFRK.....QTFEDY
  832-  868 (67.58/37.38)	DVREEHDK.....GRDKYGREKDR...VRERDSDDHHKK.....GAAGNY
  871-  915 (51.43/26.62)	DMNESHGKerrrsGRDSHNRHRERhtsVKENDTDHFKES.....QKAGGG
  925-  960 (43.81/21.54)	LVPEAEVE..........GRIKRR...RKEEES.EHTKEeeledGECGRY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     393.92|      65|      65|     478|     542|       3
---------------------------------------------------------------------------
  425-  474 (57.25/33.95)	.........................FKSLL.KS.....A...NVGSDWTWEQAMREIINDRRYGALRTLG...ERKQAFNEFLLQTK
  478-  542 (103.87/68.33)	E.E......ERLA..R.QRKR.YEDFKRMLEEC.....V...ELTPSTRWSKAVTMFEDDERFKALEREK...DRRNIFEDHVSELK
  543-  609 (83.14/53.04)	E.K......ERVKalE.DRKRnIIEYRRFLESC.....N...FIKPNSQWRKVQDRLEVDERCSRLEK.I...DQLEIFQEYLGDLE
  613-  689 (63.16/38.31)	E.EkkkiqkEELK..KaERKH.RDEFRGLIEEH.....IatgELTAKTLWRDYLMKVKDLPVYSTIASNSsgaTPKDLFEDAVEDL.
  691-  750 (56.87/33.67)	...................KR.YHELKSQIKDVlklrkV...NLSAGSAFDEFKVSISEDIGFPPIPDVR....LKVVFDDLLERAK
  751-  791 (29.63/13.58)	EkE......EKEA..RkQTRQ.TEKLVDMLRSF.....K...DITASSSWEESKHLVE.............................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     193.33|      39|      39|      45|      83|       4
---------------------------------------------------------------------------
   11-   36 (38.85/18.84)	........QPFQHPNASSIDL.....P.RGFAPPMNFQFH
   45-   83 (68.04/37.94)	EQVARLSSQNFQCVGRGGTVLNIGYPP.QSYAPQLLQSMH
   87-  122 (57.82/31.26)	ERPSQLNQVQVQHVPLGPPTL.VSQPN.VSIASG..TSLH
  124-  151 (28.62/12.14)	...PYVQTPDISMPGFGGPRALFSYPSaTSY.........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     125.73|      32|      33|     331|     363|       5
---------------------------------------------------------------------------
  316-  340 (32.47/17.39)	PTSLP.SQTST..........SDVseKLALTSDWKQ
  341-  375 (46.58/32.94)	PASVP.GSSSPVENVDRvQMIADEtsQLCDTSETDG
  376-  407 (46.68/28.43)	P.SVPqGSGTGPEESQK.PMVESE..RVESQTEEKQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26241 with Med35 domain of Kingdom Viridiplantae
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