<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26238

Description Heat shock cognate 70 kDa protein 3
SequenceMAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPINTVFDAKRLIGRRYTDSSVQSDIKLWPFTIKSGPAEKPMIVVNYKGEDKEFSAEEISSMILIKMREIAEAYLGTSIKNAVVTCSSFTSMTLSVQATKDAGVIAGLNVMRIINEPSAAAVGYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLFDGIDFYAPITRARFEEMNMDLFRKCMEPVEKCLRDAKMDKNSVDDVVLVGGSTRIPKVQQLLLDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIQRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKDEIERMVQEAEKYKSEDEEHKKKVDAKNALENYAYNMRNTIRDEKIGEKLAADDKKKIEDSIEAAIEWLEGNQLAECDEFEDKMKELESICNPIIAKMYQGGEAGGPAAGGMDEDVPPSAGGAGPKIEEVD
Length650
PositionUnknown
OrganismArabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Arabidopsis.
Aromaticity0.06
Grand average of hydropathy-0.380
Instability index34.95
Isoelectric point4.97
Molecular weight71136.84
Publications
PubMed=21478890

Function

Annotated function 
GO - Cellular Component
apoplast	GO:0048046	IEA:EnsemblPlants
cell wall	GO:0005618	IEA:EnsemblPlants
chloroplast	GO:0009507	IEA:EnsemblPlants
cytosolic ribosome	GO:0022626	IEA:EnsemblPlants
Golgi apparatus	GO:0005794	IEA:EnsemblPlants
nuclear matrix	GO:0016363	IEA:EnsemblPlants
plasma membrane	GO:0005886	IEA:EnsemblPlants
plasmodesma	GO:0009506	IEA:EnsemblPlants
vacuolar membrane	GO:0005774	IEA:EnsemblPlants

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro
mRNA binding	GO:0003729	IEA:EnsemblPlants
protease binding	GO:0002020	IEA:EnsemblPlants

GO - Biological Process
response to cadmium ion	GO:0046686	IEA:EnsemblPlants
response to heat	GO:0009408	IEA:EnsemblPlants
response to karrikin	GO:0080167	IEA:EnsemblPlants
response to virus	GO:0009615	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26238
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      85.85|      21|      41|     338|     358|       1
---------------------------------------------------------------------------
  338-  358 (35.40/22.62)	VDDVVLVGGSTRIP.KVQQLLL
  382-  400 (28.74/17.06)	VQAAILSGEGNE...KVQDLLL
  416-  435 (21.71/11.18)	V.MTVLIQRNTTIPtKKEQVF.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      75.92|      18|      21|      38|      55|       2
---------------------------------------------------------------------------
   16-   33 (19.08/ 9.68)	....TTYSCVGVWQHDRveIIA
   38-   55 (32.55/21.20)	NR..TTPSYVAFTDSER..LIG
   60-   78 (24.29/14.14)	NQvaMNPINTVF.DAKR..LIG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26238 with Med37 domain of Kingdom Viridiplantae
Unable to open file!