<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26238

Description Heat shock cognate 70 kDa protein 3
SequenceMAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPINTVFDAKRLIGRRYTDSSVQSDIKLWPFTIKSGPAEKPMIVVNYKGEDKEFSAEEISSMILIKMREIAEAYLGTSIKNAVVTCSSFTSMTLSVQATKDAGVIAGLNVMRIINEPSAAAVGYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLFDGIDFYAPITRARFEEMNMDLFRKCMEPVEKCLRDAKMDKNSVDDVVLVGGSTRIPKVQQLLLDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIQRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKDEIERMVQEAEKYKSEDEEHKKKVDAKNALENYAYNMRNTIRDEKIGEKLAADDKKKIEDSIEAAIEWLEGNQLAECDEFEDKMKELESICNPIIAKMYQGGEAGGPAAGGMDEDVPPSAGGAGPKIEEVD
Length650
PositionUnknown
OrganismArabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Arabidopsis.
Aromaticity0.06
Grand average of hydropathy-0.380
Instability index34.95
Isoelectric point4.97
Molecular weight71136.84
Publications
PubMed=21478890

Function

Annotated function 
GO - Cellular Component
apoplast	GO:0048046	IEA:EnsemblPlants
cell wall	GO:0005618	IEA:EnsemblPlants
chloroplast	GO:0009507	IEA:EnsemblPlants
cytosolic ribosome	GO:0022626	IEA:EnsemblPlants
Golgi apparatus	GO:0005794	IEA:EnsemblPlants
nuclear matrix	GO:0016363	IEA:EnsemblPlants
plasma membrane	GO:0005886	IEA:EnsemblPlants
plasmodesma	GO:0009506	IEA:EnsemblPlants
vacuolar membrane	GO:0005774	IEA:EnsemblPlants

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro
mRNA binding	GO:0003729	IEA:EnsemblPlants
protease binding	GO:0002020	IEA:EnsemblPlants

GO - Biological Process
response to cadmium ion	GO:0046686	IEA:EnsemblPlants
response to heat	GO:0009408	IEA:EnsemblPlants
response to karrikin	GO:0080167	IEA:EnsemblPlants
response to virus	GO:0009615	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26238
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      85.85|      21|      41|     338|     358|       1
---------------------------------------------------------------------------
  338-  358 (35.40/22.62)	VDDVVLVGGSTRIP.KVQQLLL
  382-  400 (28.74/17.06)	VQAAILSGEGNE...KVQDLLL
  416-  435 (21.71/11.18)	V.MTVLIQRNTTIPtKKEQVF.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      75.92|      18|      21|      38|      55|       2
---------------------------------------------------------------------------
   16-   33 (19.08/ 9.68)	....TTYSCVGVWQHDRveIIA
   38-   55 (32.55/21.20)	NR..TTPSYVAFTDSER..LIG
   60-   78 (24.29/14.14)	NQvaMNPINTVF.DAKR..LIG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26238 with Med37 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GGEAGGPAAGGMDEDVPPSAGGAGPKIEEVD
2) KDEIERMVQEAEKYKSEDEEHKKKVDAKNA
620
519
650
548










Molecular Recognition Features






MoRF SequenceStartStop




1) PKIEEVD
644
650