<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26236

Description Kinase family protein
SequenceMVVMLTQEMSGGGGPKAEDGQLFVAVAVKGLIGDKLGGAGSRRAVRWAVDNLLPKADRFVMIHVIPTITSIPTPSKMSVVVDGERLPVEEVEESVVEMYVRDVKKEFETVFVPFLKICKSSSSTKVGLVLRARGPGVPLTVLKYAPETCEVYIVCKDRITTKSMDPLINREPCTSPYAAATTHDFLRDWAASFQTLRSPSLSEPRQSTEAGTRRSASARELRFEALSLTCNKPKTPQSSKASSATIPEIVRRHGGSDIPQLNYSDFVQTYTEPPSNLEIIVSEQIDSDRSPPGTSSKSKKVEIIAEVERLKKELQSTVTKYKQACEELFSTQNKVQMLSTECSNEAKRVNNAVEKEELERKTAALEKERYMKAVKEVETAKALLAREFCQRQIAEVNALRTYLEKKKVIDQLLGTDHRYRKYTIEDIVTATEGFSPEKVIGEGGYGKVYQCSLDSTPAAVKVVRLDTPEKKQEFLQEVEVLSQLRHPHVVLLLGACPENGCLVYEYLENGSLEEYIFHRKNKPPLPWFIRFRVIFEVACGLAFLHSSKPEPIVHRDLKPGNILLNRNYVSKIADVGLAKLVTDVAPDNVTMYKNSVLAGTLHYIDPEYHRTGTIRPKSDLYAFGIIILQLVTARQPSGLVPAVENAVKKGTLTEMLDKSVTDWPLAETEELARIGLKCAEFRCRDRPDLKSEVIPVLKRLVETANSKIKKEGSNLRAPSHYFCPILREIMEEPEIAADGFTYERKAILAWLEKHNISPVTRQKLDHFKLTPNHTLRSAIRDWKSRVRFSNDIVNITG
Length797
PositionTail
OrganismArabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Arabidopsis.
Aromaticity0.07
Grand average of hydropathy-0.329
Instability index48.53
Isoelectric point8.70
Molecular weight89371.83
Publications
PubMed=21478890

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26236
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.90|      25|      30|     193|     221|       1
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  193-  221 (33.23/32.44)	FQTLrSPSLSEPR..QSTEAGtrrSASAREL
  223-  249 (38.66/23.32)	FEAL.SLTCNKPKtpQSSKAS...SATIPEI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     112.83|      33|      35|     511|     544|       2
---------------------------------------------------------------------------
  511-  544 (59.14/45.48)	SLEEYIFHRKNKPPLPWFIRFRViFEVA.CGLAFL
  547-  580 (53.70/36.15)	SKPEPIVHRDLKPGNILLNRNYV.SKIAdVGLAKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     109.85|      29|      29|     383|     411|       4
---------------------------------------------------------------------------
  355-  378 (27.21/15.92)	....KEELERK..TAALEKER.YMKAVKEVE
  382-  410 (43.69/30.12)	ALLAREFCQRQ..IAEVNALRTYLEKKKVID
  411-  441 (38.95/26.04)	QLLGTDHRYRKytIEDIVTATEGFSPEKVIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.66|      28|      36|     117|     148|       5
---------------------------------------------------------------------------
  117-  148 (43.92/34.70)	ICKSSSSTKVGLVLRARGPGVPltvlKYAPET
  154-  181 (51.74/31.67)	VCKDRITTKSMDPLINREPCTS....PYAAAT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.53|      23|      36|     296|     318|       7
---------------------------------------------------------------------------
  296-  318 (33.69/28.42)	SKSKKVEIIA.EVERLKKELQSTV
  330-  353 (32.84/27.49)	STQNKVQMLStECSNEAKRVNNAV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26236 with Med32 domain of Kingdom Viridiplantae
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