<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26234

Description Uncharacterized protein
SequenceMVVPGRRTVWDCVIELTKMAQENCIDPRLWASQLSSNLKFFAVELPSTELAEVIVSYICWDNNVPILWKFLERAMALKLVSPLVVLALLSHRVVPSRCTQVAAYRIYLELLKRNMFTIKVHISGPHYQKVMISVANVLRLSKLFDLETSKPGVLLVEFVFKMVLQLLDATLSDEGLLELSQDSSSQWLVKSQEMEIDAPERYNEKTGSLEMLQSLNTIMAIELIAEFLRNTVISRLLYLVSSNRASNWHEFVQKVQLLGENSSALKNSKVLNSGDLLQLISSRRFGYSCDIKVTSSRKSNAIVDFGSLSSFAGLCHGASLSSLWLPLDLVFEDAMDGYQVNPTSAIEIITGLAKTLKEINGSTWHDTFLGLWIAALRLVQRERDPIEGPIPRLDTRLCMSLCIVPLVVANLIEERKYVSVMEKLRNDLITSLQVLGDFPGLLAPPKCVVSAANKAATKAILFLSGGNVGKSCSDVINMKEMPINCSGNMRHLIVEACIARNILDTSAYSWSGYVNGRINQIPQSLPNEVPCWSSFVKGAQLNAAMVNALVSVPASSLAELEKLYEVAVKGSDDEKISAATVLCGASLTRGWNIQEHTVEFLTRLLSPPVPADYSSAENHLIGYACMLNVVIVGIGSVDCIQIFSLHGMVPQLACSLMPICEEFGSYSPSVSWTLPSGEQVSAYSVFSNAFTLLLKLWRFNHPPIEHGVGDVPTVGSQLTPEHLLSVRNSYLVSSETLDRDRNRKRLSEVARAASCQPVFVDSFPKLKIWYRQHQRCIAATLSGLTHGSPIHQTVEALLNMTFGKVRGSQTLNPVNSGTSSSSGAASEDSNTRPAFPAWDILKAVPYVVDAALTACTHGRLSPRQLATGLKDLADFLPASLATIVSYFSAEVSRGVWKPVFMNGVDWPSPATNLSTVEEYITKILATTGVDIPSLAPGGSSPATLPLPLAAFVSLTITYKIDKASERFLNLAGPALECLAAGCPWPCMPIVASLWTQKAKRWFDFLVFSASRTVFLHNQDAVIQLLRNCFSATLGLNAAPMSNDGGVGALLGHGFGSHFYGGISPVAPGILYLRMYRALRDTVSVSEEILSLLIHSVEDIAQNRLSKEKLERLKTVKNGTRYGQSSLATAMTQVKLAASLSASLVWLTGGLGVVHLLIKETIPSWFLSTDKSDREQRPSDLVAELRGHALAYFVVLCGAFAWGVDSRSTASKRRRQAILGSHLQFIASVLDGKISVGCETATWRAYISGLVSLMVSCLPLWVTEIDTEVLKSVSSGLRKWGKEELAIVLLSLGGLRTMDYAADFIIHLRS
Length1309
PositionTail
OrganismArabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Arabidopsis.
Aromaticity0.08
Grand average of hydropathy0.185
Instability index44.04
Isoelectric point7.86
Molecular weight143194.13
Publications
PubMed=21478890

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26234
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.72|      24|      42|     910|     950|       1
---------------------------------------------------------------------------
  885-  908 (45.85/19.95)	SYFSAEVSRGVWKPVFMNGVDWPS
  910-  933 (38.87/48.15)	ATNLSTVEEYITKILATTGVDIPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     181.38|      43|      70|     747|     789|       2
---------------------------------------------------------------------------
  685-  717 (36.66/19.61)	...........VFSNAFTlLLKLWRFNHPP.IEHGVGDVpTVG..SQ
  747-  789 (78.27/50.56)	SEVARAASCQPVFVDSFP.KLKIWYRQHQRCIAATLSGL.THG..SP
  819-  862 (66.46/41.78)	SSSSGAASEDSNTRPAFP.AWDI.LKAVPYVVDAALTAC.THGrlSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.64|      16|      20|     510|     529|       3
---------------------------------------------------------------------------
  510-  527 (27.39/33.04)	WSGYVNGriNQIPQSLPN
  532-  547 (29.25/17.28)	WSSFVKG..AQLNAAMVN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.92|      15|      24|    1015|    1029|       4
---------------------------------------------------------------------------
 1015- 1029 (27.33/17.91)	LHNQDAVIQLLRNCF
 1040- 1054 (27.59/18.16)	MSNDGGVGALLGHGF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     177.89|      59|     162|    1055|    1127|       5
---------------------------------------------------------------------------
 1055- 1127 (84.78/84.25)	GSHFYgGISPVAPGIL.......YLRMYraLRDTVSVSEEILSLLIHSVEDiaqnrlskeklERLKTVKNGTR.YGQSSLA
 1219- 1285 (93.11/60.10)	GSHLQ.FIASVLDGKIsvgcetaTWRAY..ISGLVSLMVSCLPLWVTEIDT...........EVLKSVSSGLRkWGKEELA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.81|      11|      20|     657|     667|       6
---------------------------------------------------------------------------
  657-  667 (22.33/13.43)	MPICEEFGSYS
  674-  684 (19.47/10.78)	LPSGEQVSAYS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     132.55|      44|     168|     441|     486|       8
---------------------------------------------------------------------------
  441-  486 (72.72/45.80)	LLAP..PKCVVSAANK....AATKAILFLSGGNVgkSCSDVINMKEM.P.INCS
  604-  655 (59.83/31.97)	LLSPpvPADYSSAENHligyACMLNVVIVGIGSV..DCIQIFSLHGMvPqLACS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.95|      13|      25|     142|     154|       9
---------------------------------------------------------------------------
  142-  154 (22.08/11.56)	KLFDLETSKPGVL
  165-  177 (20.87/10.56)	QLLDATLSDEGLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.22|      21|      25|     359|     379|      10
---------------------------------------------------------------------------
  359-  379 (38.54/23.96)	INGS.TWHDTFLGLWIAALRLV
  386-  407 (34.68/20.78)	IEGPiPRLDTRLCMSLCIVPLV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.45|      11|     610|     581|     594|      13
---------------------------------------------------------------------------
  581-  594 (18.15/16.03)	VLCGASltrGWNIQ
 1194- 1204 (23.30/11.84)	VLCGAF...AWGVD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.27|      31|     134|     184|     215|      16
---------------------------------------------------------------------------
  184-  215 (50.39/37.84)	SSQWLVKSQEMEiDAPERYN.EKTGSLEMLQSL
  321-  352 (50.88/33.37)	SSLWLPLDLVFE.DAMDGYQvNPTSAIEIITGL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.93|      17|      37|     228|     244|      17
---------------------------------------------------------------------------
  228-  244 (28.67/17.13)	LRNTVI...SRLLYLVSSNR
  265-  284 (23.27/12.58)	LKNSKVlnsGDLLQLISSRR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26234 with Med33 domain of Kingdom Viridiplantae
Unable to open file!