<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26231

Description Uncharacterized protein
SequenceMAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPTNTVFDAKRLIGRRYSDPSVQADKSHWPFKVISGPGEKPMIVVNHKGEEKQFSAEEISSMVLVKMREIAEAFLGTPVKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKASSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDITGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLFEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKNSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDEEHKKKVDAKNALENYAYNMRNTIKDEKIASKLDAADKKKIEDAIDQAIEWLDGNQLAEADEFEDKMKELESICNPIIARMYQGAGPDMGGAAGMDDDAPASGSGGAGPKIEEVD
Length650
PositionUnknown
OrganismArabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Arabidopsis.
Aromaticity0.06
Grand average of hydropathy-0.430
Instability index31.89
Isoelectric point5.14
Molecular weight71155.71
Publications
PubMed=21478890

Function

Annotated function 
GO - Cellular Component
cell wall	GO:0005618	IEA:EnsemblPlants
cytosol	GO:0005829	IEA:EnsemblPlants
Golgi apparatus	GO:0005794	IEA:EnsemblPlants
mitochondrion	GO:0005739	IEA:EnsemblPlants
plasma membrane	GO:0005886	IEA:EnsemblPlants
vacuolar membrane	GO:0005774	IEA:EnsemblPlants

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro
ubiquitin protein ligase binding	GO:0031625	IEA:EnsemblPlants

GO - Biological Process
protein ubiquitination	GO:0016567	IEA:EnsemblPlants
response to bacterium	GO:0009617	IEA:EnsemblPlants
response to cadmium ion	GO:0046686	IEA:EnsemblPlants
response to heat	GO:0009408	IEA:EnsemblPlants
response to virus	GO:0009615	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26231
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     190.20|      71|     189|     144|     218|       1
---------------------------------------------------------------------------
  102-  196 (92.30/68.88)	GEKPMIVVNHKGEEKQFSAEEIssmvlvkmreiaeaflgtpvKNAVVTVPAYFNDSQR.....QATKDagVISGLNVMRIINePTaAAIAYGLDKKASSV
  197-  231 (37.09/17.02)	GEKNVLIFDLGGGTFDVSLLTI....................EEGIFEVKATAGD.............................................
  334-  386 (60.81/34.02)	..........................................KNSVHDV.VLVGGSTRipkvqQLLQD..FFNGKELCKSIN.PD.EAVAYGAAVQAAIL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.19|      18|      21|      38|      55|       2
---------------------------------------------------------------------------
   16-   33 (19.09/11.45)	....TTYSCVGVWQHDRveIIA
   38-   55 (32.57/24.91)	NR..TTPSYVAFTDSER..LIG
   60-   78 (24.54/16.89)	NQvaMNPTNTVF.DAKR..LIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     113.02|      37|      40|     496|     535|       3
---------------------------------------------------------------------------
  499-  535 (59.59/41.25)	KTTGQKNKIT..ITNDKGRLSKEEIEKMVQEAEKYKAED
  540-  578 (53.43/28.92)	KKVDAKNALEnyAYNMRNTIKDEKIASKLDAADKKKIED
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26231 with Med37 domain of Kingdom Viridiplantae
Unable to open file!