<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26230

Description Predicted protein
SequenceMTLIVKFVVEQHCSFHSDNRSQLKFVNGGDKRRSNCWKLFGIGSHLPEVNKSRGHFLQTNWSKHAKAFECIPSLNKFMGSNFLYSLESQKLARDREMGARSIENIAPVTVQTLARPEIEKAWCTLINLSINNTYLRPGITPAIDDGSTDRSSSTKRSTVKVTSSADGSFYAHNHPEHSQRSLRGTAKSFDSFSSSSVGDNNITIGKVPRVNDEVRDSVTGCKYTNGMEMPPIKNSAHLVRLVEPREASLGEIDYDDIMEIIEVDQIVMDHCPSRCPKQPSVSKFVDTFASRREEEQGLFPELCSNCSHGIKLGLCPEASTHVEQMKDTLLAISNEFLDNTYDLGPDHVEQLRQKRLLLKKQIQQLEILIQNKERKKSECLVSTPSHNIQYETPQTTNHVVVYTQTDSPDKSCGGLCPATEGRYVTDNWNMPRDYLVSKERYDISSGSVEREQSVSEVIDVTDTESSNDKKWASRDFPWTKNLEVYNKIVFGNHSFRPNQREIINATMSGCDVFVLMPTGGGKSLTYQLPALLCAGITLVISPLVSLIQDQIMNLLQTNISAASLSAGMEWAEQLEILQELSSENSKYKLLYVTPEKVAKSESLIRHLEILNSRSLLARFVIDEAHCVSQWGHDFRPDYQGLGVLKQKFPNIPMLALTATATTSVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTNKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVTEMLRAFGHKAAFYHGSMDPGKRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYTDYIRVKHMISQGGLGQGQMKMGYNCKASSGRMLETNTENLLRMVSYCENEVDCRRFLQLVHLGEKFDSTNCKKTCDNCSSSKILIDKDVTVIARQLVELVKLTGERFSSAHIVEIYRGSLNQSVKRNRQETLHLHGAGKHLTKSEASRILHYLVTEDILAEGVRKSDLYGSVSSLLKVNRSKAASLLSGGQSITMRFPSTIKASKPSKSTAKVPLKQTTLPMAKAAPQDSNLPHILLTALKKLRSDIVKESSDGVMAYHIFGKATLEQISKRLPRTKEELLDINGLGKAKVSKYGDRLLETIYSTINDHYKTGPGSGKRRRDENICPNVADDDDPDWTASQSHKKAVKNKK
Length1172
PositionUnknown
OrganismArabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Arabidopsis.
Aromaticity0.07
Grand average of hydropathy-0.447
Instability index50.58
Isoelectric point8.66
Molecular weight131537.39
Publications
PubMed=21478890

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26230
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.12|      16|      21|      78|      96|       1
---------------------------------------------------------------------------
   78-   93 (27.68/22.77)	MGSNFLYSLES...QKLAR
   97-  115 (22.44/ 8.29)	MGARSIENIAPvtvQTLAR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.43|      22|     206|     363|     384|       3
---------------------------------------------------------------------------
  363-  384 (38.23/30.62)	QQLEILIQ.NKERKKSECLVSTP
  572-  594 (33.20/25.42)	EQLEILQElSSENSKYKLLYVTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.71|      10|      23|     321|     330|       4
---------------------------------------------------------------------------
  321-  330 (18.00/14.65)	HVEQMKDTLL
  347-  356 (17.70/14.26)	HVEQLRQKRL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.66|      12|      28|     893|     904|       5
---------------------------------------------------------------------------
  893-  904 (22.66/13.50)	KKTCDNCSSSKI
  922-  933 (20.99/11.94)	KLTGERFSSAHI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.26|      16|      22|     713|     729|       8
---------------------------------------------------------------------------
  713-  729 (28.28/25.68)	FDECGIIYCLSrMDCEK
  737-  752 (31.99/23.14)	FGHKAAFYHGS.MDPGK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.15|      17|      17|     422|     438|       9
---------------------------------------------------------------------------
  422-  438 (32.27/23.27)	RYVTDNWNMPRDYLVSK
  440-  456 (27.87/19.03)	RYDISSGSVEREQSVSE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.03|      14|      17|     476|     491|      10
---------------------------------------------------------------------------
  476-  491 (22.64/20.46)	F.PWTKnlEVYNKIVFG
  495-  509 (21.39/12.03)	FrPNQR..EIINATMSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.19|      17|      21|     196|     212|      11
---------------------------------------------------------------------------
  196-  212 (29.33/19.14)	SVGDNNITIG.KVPRVND
  217-  234 (27.85/17.79)	SVTGCKYTNGmEMPPIKN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.88|      24|      28|     786|     810|      12
---------------------------------------------------------------------------
  786-  810 (40.93/32.85)	VIHHSLPKSIEGYHQ.ECGRAGRdGQ
  815-  839 (39.95/26.49)	VLYYSYTDYIRVKHMiSQGGLGQ.GQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26230 with Med34 domain of Kingdom Viridiplantae
Unable to open file!