<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26228

Description Uncharacterized protein
SequenceMARDSLVLAIFLLGCLFAISIAKEEATKLGSVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVGFTDSERLIGEAAKNQAAVNPERTVFDVKRLIGRKFEDKEVQKDMKLVPYKIVNKEGKPYIQVKIKDGETKVFSPEEISAMILTKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQATKDAGVIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSVLTIDNGVFEVLSTNGDTHLGGEDFDHRVMDYFIKLIKKKHQKDISKDYKALGKLRRECERAKRALSSQHQVRVEIESLFDGTDFSEPLTRARFEELNNDLFRKTMGPVKKAMDDAGLQKSQIDEIVLVGGSTRIPKVQQLLKDFFEGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLNGIPPAPRGTPQIEVTFEVDANGILNVKAEDKASGKSEKITITNEKGRLSQEEIERMVKEAEEFADEDKKVKERIDARNSLETYVYNMKNQVNDKDKLADKLEADDKEKIEAATKDALEWLDENQNAEKEDYDEKLKEVEAVCNPIITAVYQKSGGAPGGESASTDEDDESHDEL
Length662
PositionUnknown
OrganismArabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Arabidopsis.
Aromaticity0.06
Grand average of hydropathy-0.466
Instability index27.56
Isoelectric point5.07
Molecular weight73042.88
Publications
PubMed=21478890

Function

Annotated function 
GO - Cellular Component
endoplasmic reticulum	GO:0005783	IEA:UniProtKB-KW

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26228
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.73|      11|      27|     226|     236|       1
---------------------------------------------------------------------------
  226-  236 (20.38/10.89)	LGGGTFDVSVL
  254-  264 (22.35/12.58)	LGGEDFDHRVM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      91.92|      27|      27|     533|     559|       2
---------------------------------------------------------------------------
  533-  558 (35.62/21.15)	.KG.RL.SQEEIERMVKEAE.EFADEDKKV
  559-  586 (23.79/11.79)	K..eRIdARNSLETYVYNMKnQVNDKDKLA
  588-  612 (32.52/18.70)	KLE.AD.DKEKIEAATKDAL.EWLDENQ..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      93.74|      26|      27|     381|     406|       3
---------------------------------------------------------------------------
  191-  217 (30.10/18.13)	I..AGLNVARII.NEPTAaaIAYGLDKKGG.
  381-  405 (37.92/24.88)	...EGKEPNKGV.NPDEA..VAYGAAVQGGI
  406-  435 (25.72/14.34)	LsgEGGDETKDIlLLDVA.pLTLGIETVGGV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.25|      14|      21|      32|      51|       4
---------------------------------------------------------------------------
   32-   45 (26.89/23.72)	VIGIDLGT..TYSCVG
   54-   69 (23.36/ 6.80)	IIANDQGNriTPSWVG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      57.14|      12|      27|      97|     108|       5
---------------------------------------------------------------------------
   74-   85 (17.40/ 9.46)	ERLIGEAAKNQA
   97-  108 (20.12/12.08)	KRLIGRKFEDKE
  126-  137 (19.62/11.61)	KPYIQVKIKDGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     116.36|      38|     195|     276|     316|       6
---------------------------------------------------------------------------
  276-  316 (53.45/33.73)	QKDISKDYKALGKLRRE.CERAKRAlSSQHQVRVEIESlfDG
  472-  510 (62.92/30.80)	ERSLTKDCRLLGKFDLNgIPPAPRG.TPQIEVTFEVDA..NG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26228 with Med37 domain of Kingdom Viridiplantae
Unable to open file!