<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26225

Description Uncharacterized protein
SequenceMANNPPQSSGAQQFRPMAPGQQGQHFVPAASQPFHPYGHVPPNVQSQPPQYSQPIQQQQLFPVRPGQPVHITSSSQAVLVPYIQTNKILTSGSTQPQPNAPQMTGFATSGPPFSSPYTFVPSSYPQQQPTSLVQPNSQMHVAGVPPAANTWPVPVNQSTSLVSSVQQTGQQTPVAVSTDPGNLTPQSASDWQEHTSVDGRKYYYNKRTKQSNWEKPLELMTPLERADASTVWKEFTTPEGKKYYYNKVTKESKWTIPEDLKLAREQAQLASEKTSLSEAGSTPLSNHAASSSDLAVSTVTSVVPSTSSALPGHSSSPIQAGLAVPVTRPPSVAPVTPTSAATSDTEASAIKPDNLPSRGADDSNDGATAQNNEAENKEMSVNGKANLSPAGDKANVEEPMVYATKQEAKAAFKSLLESVNVHSDWTWEQTLKEIVHDKRYGALRTLGERKQAFNEYLGQRKKVEAEERRRRQKKAREEFVKMLEECEELSSSMKWSKAMSLFENDERFKAVDRPRDREDLFDNYVVELERKEREKAAEEHRQHMAEYRKFLETCDYIKAGTQWRKIQERLEDDERCSCLEKIDRLIGFEEYMLDLEKEEEEQKRVEKEHVRRAERKNRDALRTLLEEHVAAGILTAKTYWLDYCIELKDLPQYQAVASNTSGSTPKDLFEDITEELEKQYHEDKSYVKDAMKSRKISMVSSWLFEDFKSAISEDLSSQPISDINLKLIYDDLVGRAKEKEEKEARKLQRLAEEFTNLLHTFKEITAASNWEDSKQLLEESQEYRSIGDESVSRGLFEEYITSLQEKAKEKERKRDEEKVRKEKERDEKEKRKDKDKERREKEREREKEKGKERSKREESDGETAMDVSEGHKDEKRKGKDRDRKHRRRHHNSDEDVSSDRDDRDESKKSSRKHGNDRKKSRKHANSPESDSENRHKRQKKEQREGSRRSGHDELEDGEVGEDGEIRH
Length967
PositionUnknown
OrganismArabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Arabidopsis.
Aromaticity0.06
Grand average of hydropathy-1.179
Instability index58.39
Isoelectric point6.08
Molecular weight110467.84
Publications
PubMed=21478890

Function

Annotated function 
GO - Cellular Component
cytosol	GO:0005829	IEA:EnsemblPlants
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26225
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     186.20|      32|      32|     872|     903|       1
---------------------------------------------------------------------------
  804-  833 (30.80/12.13)	.QEKAKEKER..KR.....DEEKVRKEKER....D..EKEKRKD.
  834-  871 (32.28/13.10)	KDKERREKER..ERekekgKERSKREESDGetamD..VS...EGH
  872-  903 (54.49/27.67)	KDEKRKGKDR..DR.....KHRRRHHNSDE....D..VSSDRDDR
  904-  934 (36.19/15.67)	DESKKSSRKHgnDR.....KKSRKHANSPE.........SDSENR
  936-  966 (32.44/13.21)	...KRQKKEQ..RE.....GSRRSGHDELE....DgeVGEDGEIR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     220.33|      40|      40|     188|     227|       2
---------------------------------------------------------------------------
  127-  177 (47.72/31.78)	QQPTSLVQPNSQMHvagvppaANT.WpvpvNQSTSLV..SSVQQTGQQTPVAVS
  178-  213 (67.67/48.84)	TDPGNL.TP...QS.......ASD.W....QEHTSVD..GRKYYYNKRTKQSNW
  214-  254 (65.86/47.29)	EKPLELMTPLERAD.......ASTvW....KEFTTPE..GKKYYYNKVTKESKW
  255-  293 (39.08/24.39)	TIPEDLKLAREQAQ......lAS........EKTSLSeaGSTPLSNHAASSSD.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     454.47|      69|      69|     439|     507|       3
---------------------------------------------------------------------------
  391-  457 (91.46/48.27)	GD..KANVE..EPMVYATKQEAKAAFKSLLES...V.NVHSDWTWEQTLKEIVH.....DKR............YGAL..RTLG........E.R...KQAFNEYL
  458-  525 (88.90/46.72)	GQ..RKKVE..AEERRRRQKKAREEFVKMLEE...CEELSSSMKWSKAMSLFEN.....DER......................fkavdrprD.R...EDLFDNYV
  526-  592 (76.08/38.95)	VEleRKEREkaAEEHR..QHMA..EYRKFLET...CDYIKAGTQWRKIQERLED.....DER......cscleKIDRL.....................IGFEEYM
  600-  673 (58.78/28.46)	EE..QKRVE..KEHVRRAERKNRDALRTLLEEhvaAGILTAKTYW.................ldycielkdlpQYQAVasNTSG........StP...KDLFEDIT
  674-  733 (57.93/27.94)	........E..ELEKQYHEDKS...YVKDAMK...SRKISMVSSW.....LFEDfksaiSED...........LSSQP..ISDI........N.L...KLIYDDLV
  734-  800 (81.33/42.13)	GR..AKEKE..EKEARKLQRLA.EEFTNLLHT...FKEITAASNWEDSKQLLEE.....SQE.................yRSIG........D.EsvsRGLFEEYI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|      95.51|      11|      19|       6|      16|       4
---------------------------------------------------------------------------
    6-   16 (22.42/11.34)	P..QSSGAQQFRP
   28-   36 (17.19/ 6.95)	P..AAS..QPFHP
   42-   54 (17.48/ 7.20)	PnvQSQPPQYSQP
  101-  111 (19.20/ 8.64)	P..QMTGFATSGP
  112-  121 (19.21/ 8.65)	P..FSS.PYTFVP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.56|      24|      30|     296|     325|       5
---------------------------------------------------------------------------
  296-  319 (41.25/34.67)	VSTVTSVVP..STSSALPGHSSSPIQ
  326-  351 (36.31/16.46)	VTRPPSVAPvtPTSAATSDTEASAIK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26225 with Med35 domain of Kingdom Viridiplantae
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