<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26224

Description Uncharacterized protein
SequenceMDQSQRTVAATPSSSRSYQFHPARAAIIDLFNLYLGRGSRQKPDESLRDPPNKSQKRVHAPNGDLPPRNEQFILDFEQLQSQFNDPEQLRTITESVLISLVVQCSNHAPRAEFLLFALRTLCRISYINWDTFLPSLLSSVSAAEASLSQGVQAAATAASSATSSQSLVPVSANPVSSSSNYHSTNPTSLLPSAHGIGSPSASGNEPGSLTTFAQVKSLENGQQIARAGQTVRENAMRNSQRIRAAAINSLRQLSCKIILIGVEFSLKPVTHAEIFQYMLNWLVNWDRRDLGTEDSAGTSWRSEKTLAEWLRSCLDVIWLLVKEVESRIPFYELLRSGLQFIENIPDDEALFTLIMEIHRRRDAMAMHMLMLDQHLHCPTFGTHRIVSQVTANVSAEAVQHLRHSPITYPSVLGEPLYGEDLAMFIPKGSLDWERAVRCIRHAIRTTPSPDWWKRVLVVAPCYRPSTQPGPIPGAVFTSDMICEAIIDRIVELLKLTNSGNDCFGIDLVSVTFSPLYADANCWQEWLVFSDIFFFLIKSGCTDFVDFIDKLVSRLNGVDNHILRTNHVTWLLAQIIRVELVMTALNSDAKKVETTRKILSFHREDRNSDPNNPQSVLLDFVSSCQNLRIWSLSTTTRAYLNNEQLLKGKQIDEWWRSKGERMMDYMNMDDRSIGMFWVVSYTMAQPACETVINWLSSAGMAELPGLQPNDRVMMTQEVTPLPMSLLSGFSMNLCLKLALQMEEALFVSQVVPSIAMVETYTRLLLISPHSMFRSHFSQLAQRNASLLSKPGVTLLVLEILNYRLLPLYRYQGKSKTLMYDVTKIISALKGKRGDHRIFRLAENLCMNLILSLRDFFSVKREGKGPTEFTETLNRITIMTLAITIKTRGIADPDHLVYLQTMLEQILATSQHTWSEKTMRHFPSLLRDTLNVRVDKRGLSIQAWQQAETTVINQCTQLLSPSAEPAYVSTYLSHSFPQHRQYLCAGACLLMQGHAENINSTNLARVLREVSPEEVTANIYTLVDVLLHHVHVDLQQGQSLEAVLDKAGANLAFFFWTHEMLPLDIFLLALIDRDDDPHALIIAMSLLKTPDLLLRIKNYCQNRGSPEHWLVTQVFKRNELQKALGNHLSWKDRYPTFFDDIAARLLPVIPLVVYRLIENNAMEQADNLLLAHSHFLAYHPLRFTFVRDILAYFYGHLPGKLVMRMLKVLDLSKIPFSESFPQYISPAGAAVCPPLDYFASLLLNLVNNVIPPLSSSSNCSSRSGSMADILNSSARPLHGKTPGTSQPGPANASEGQKAFYQIQDPGTYTQLVLETAVIEILSLPVSAAQIVSSLVQIIVNIQSTLIQSGNGFHGAANGVGQGSVLPTSPSGGSTDSMSASRSTCLIPGINTASFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHTQLYLEAARVTRETWWLKDGKRAQGELDSAVGYALMDPTWAAQDNTSTAIGNIVALLHAFFSNLPQEWLDGTNAIIKNLRPVTSVAMLRVVFRIMGPLLPRLASTHTLFNKTLTLLLTALVDVFGKNAQTTAPVEASKIADLIDFLHHIIHYEGQGGAVQTSSKPRPDILALIGRAADSLRPDVQHLLAHLKTNPNSSIYAAAHQQNTAKTNTS
Length1637
PositionTail
OrganismArabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Arabidopsis.
Aromaticity0.08
Grand average of hydropathy-0.044
Instability index41.50
Isoelectric point7.06
Molecular weight182305.23
Publications
PubMed=21478890

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26224
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      98.84|      32|     215|     308|     343|       1
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  308-  343 (44.53/46.98)	EW........LRSClDVIWLLVKEVesRIpFYELLRSG....LQFIEN
  525-  549 (24.10/11.80)	..................WLVFSDI.....FFFLIKSGctdfVDFIDK
  552-  585 (30.21/17.28)	SRlngvdnhiLRTN.HVTWLLAQII..RV...ELVMTA....LN....
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     129.80|      37|     410|     954|     990|       4
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  954-  990 (67.97/38.65)	TQLLSPSAEPAYVSTYLSHSFPQHRQYLCAG.ACLLMQ
 1372- 1409 (61.83/34.52)	TDSMSASRSTCLIPGINTASFVSRSGYTCQQlSCLLIQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     216.25|      68|     542|     999|    1081|       5
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 1010- 1081 (103.77/110.34)	PEEvTANIYTLVDVLLHHVHVDlQQGQSLEAVLDKAGANLAFFFWTHEMLPLDI.FLLALIdrDDDPHALIIA
 1556- 1624 (112.48/78.11)	PVE.ASKIADLIDFLHHIIHYE.GQGGAVQTSSKPRPDILALIGRAADSLRPDVqHLLAHL..KTNPNSSIYA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.30|      33|      40|     711|     745|       6
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  711-  745 (49.30/42.49)	VMMTQEVTPLPM.SLLSGFSMNLClKLAlQMEEALF
  753-  786 (52.01/34.83)	IAMVETYTRLLLiSPHSMFRSHFS.QLA.QRNASLL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     230.40|      75|     411|     179|     282|       7
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  179-  256 (119.93/70.15)	SNYHSTNPT..SLLPSA....HGiGSPSASgnEPGSLTTFAQVKSLENGQQIARAGQTVRENAMRN..SQRIRAAAI.NSLRQLSCK
 1255- 1338 (110.47/54.31)	SNCSSRSGSmaDILNSSarplHG.KTPGTS..QPGPANASEGQKAFYQIQDPGTYTQLVLETAVIEilSLPVSAAQIvSSLVQIIVN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     232.09|      75|     473|     612|     703|       8
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  612-  694 (116.79/96.88)	PqSVLLDFVSSCQNL...RIWslsTTTRAYLNNE.QLLKGKQIDewWRSKGERMMDymNMDDRSIGMFWVVSYTMAQ.PACETVINWL
 1088- 1167 (115.30/69.69)	P.DLLLRIKNYCQNRgspEHW...LVTQVFKRNElQKALGNHLS..WKDRYPTFFD..DIAARLLPVIPLVVYRLIEnNAMEQADNLL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26224 with Med23 domain of Kingdom Viridiplantae
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