<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26223

Description Predicted protein
SequenceMDNIVDSLNKAYEKFVLASAGVLESKESAGGQKASLTDAALENFKEKWELFRVACDQAEEFVESVKQRIGSECLVDEATGLTTASGNSGGQAPAATGAATSLPPISAVRLEQMSRAVRWLVLELQRGSGAAPGSVHSSSTGYMDSNQSMRLLSSWIGQIGDLGLNLLWRFIHIVVSLWYIVSGISEAIESYAISLGLNKKYSSIDLEKLRCLAVVVDIEAVQDVAKVVELLQWLTTIGVKQVGLFDSQGLLKKSKDLILETVPGSMLLEEIGKDFSPDGKRIALEFISSSDNKEAVMKAANILLQRYLKSSHPENDQGENFFTESHLNEALGVVGENVHVPDLLLVYGPIRSHLGFPAWRLRYTEIVHMGTLKYMRYGSLLKAIHKFTGVHQNYGKSLISHYFIYSLSHTQFKY
Length414
PositionTail
OrganismArabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Arabidopsis.
Aromaticity0.08
Grand average of hydropathy-0.024
Instability index45.67
Isoelectric point6.03
Molecular weight45564.57
Publications
PubMed=21478890

Function

Annotated function 
GO - Cellular Component
dehydrodolichyl diphosphate synthase complex	GO:1904423	IEA:InterPro
endoplasmic reticulum	GO:0005783	IEA:UniProtKB-KW
integral component of membrane	GO:0016021	IEA:UniProtKB-KW

GO - Biological Function
transferase activity, transferring alkyl or aryl (other than methyl) groups	GO:0016765	IEA:InterPro

GO - Biological Process
dolichol biosynthetic process	GO:0019408	IEA:InterPro
protein glycosylation	GO:0006486	IEA:UniProtKB-UniPathway









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26223
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.21|      36|     190|     162|     201|       1
---------------------------------------------------------------------------
  162-  201 (54.88/42.66)	LGLNlLW..RFIHIV..VSLWYI.VSGISEAIESYAislGLNKKY
  354-  394 (53.33/30.58)	LGFP.AWrlRYTEIVhmGTLKYMrYGSLLKAIHKFT...GVHQNY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     121.25|      39|      56|       2|      40|       2
---------------------------------------------------------------------------
    2-   40 (61.58/41.34)	DNIVDSLNK..AYEKFVLASAGVLESKESAGGQKASLTDAA
   59-   99 (59.67/39.85)	EEFVESVKQriGSECLVDEATGLTTASGNSGGQAPAATGAA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26223 with Med32 domain of Kingdom Viridiplantae
Unable to open file!