<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26222

Description Uncharacterized protein
SequenceMWKSIGELSCDDYVKAGLTLEDAKGFDKLVRDVISTAIETDPRDQWKALVDESSLKPWHPHPLHQLLYYSVYSNWDSSALGPPLYWFPSPSQSKSTNLGKLMETHGSRLLGPTYKNPLESFELFRRFSVEHPEVYWSIVIDELSLVFHTPPRCILDKSKPGGTWLPDAVLNIAECCLMPSSHLKKEDDSMAVVWRNEGFDDSPVNQMTLKQLREQVMLVANAIGGSFEKGDTIAIDMPMTVDAVIIYFAIILAGCIVVSIADSFAAKEIATRLKISKAKGIFTQDYILRGGRRFPLYSRVVEAAPSKVIVLPASGKLRVQLREQDISWMDFLSNAKTHLSGENYYRPIHLPVASVINILFSSGTTGEPKAIPWTQLSPIRSACDGWAHLDVQVGNTYCWPTNLGWVMGPTLIFSCFLTGATLALYQGSPLGRGFGKFDAGVMVLGTVPSLVKTWKRTNCMEGLNWTKIKYFATTGEASNVDDVLWLSSKAYYKPVIECCGGTELASSYIIGSPLQPQAFGAFSTPSMTTRIIIFDENGVPYPDDQPCTGEVGLLPQHLGATDRLLNANHDEVYFKGMPMYKDTRLRRHGDIVKRTIGGYYNVQGRADDTMNLGGIKTSSIEIEWVCDQADECISETAAVSLTPPNGGPELLVIFAVLKEGFKKQSEEELKMKFSRTIQKDLNPLFKVSFVKIVPEFPRTASNKLLRRGGLHNVSWFQLLPSETELNPGSDRSSRAEQNDVATYLVLSSHLRLQKEGFLTTWTNSFVGPWDPSQGLYNPDEKIKLWLFLPGRHSSITDKAQAAVSKLRVNMPVVYAYLVVASGIWVAPGDSEEISVAFSQSLRNCIERALSGLSYMRFGDVFSKFSPQSEEYLRRGQPTVEFIFAATEEAVFVHVIISAKNVRTLSSGDAERMLRSSLKNSSYRLPELFCNVWGWPRVGIIDYATYESFLFDRNTSHRLMLFPPVIVSPHGMRGSLTGFCPNDFVKQVYFSSGNLRTSSGYVGRGSRLINGNHCYVEVTLGCCQNKNDNKNDNTSQANSNFAVNLPHNQCPEPSVGSKDHRKGQPDLLSVCEKKFIYPAEAVLVPILQSAFAKFSLKRAGDFDFLGASENKSDGFYEKNDYNSSGSSRNSSISSTSSASSGSGWRMTSRTGDLDADADSLTCRQSGLTSNDDRPKMGSKRPRTGMAESFGQVGIENDQVGWDWDADDDDDDREVGMDIKALLSEFGDFGDFFENDALPFGEPPGTAESHALIFPPDSADVGSSPVDMMDVSDQIVLPVGFSSFESFNPVPPIIDECLIKSQEVLNSSITSVPSYQMSISSTSEFDHLMKAEAMMTFAPEYGAVEAPMSEISSTYFKSPYLPKSHKVESSNSRTSNYVYGATPPTTDSDGAGNKILFGSKSCIGNNDGRTLFHSREHYTQVEGRKDQHDKLPTVISDNNSTKEGVSHSKHSKHSAANAVKVVQGKKTDGISAVVRTLLSSKTLLATDVGNVMFQAFMCRMRHTSSKHSSPVSLTRLSGNFFLNQLPNEPSTLTDNISARNEIYKKDIPTRIAGDFDGGMLDSHMSAPVGVWRTVSVPKTAKPASSPNIEAGSSLPHSSFSEDSLLSYGQRQPLHELLDGISLLVQQATSFVDLALDSDCGDGPYGWLALEELWRRELSCGPSAGHAGCGGTLASCHSLDIAGVKLVDPLSTEVFPSSVITLLQSDIKTALKSAFGQSDGPLSVTDWCKGRNQSGDGGSISEGSTAESALSEVNGVKISDVSNAIDGGKGEETAQSLDIYSSELLRPTLFVLPSPAILVGYQDDWLKISTNSLPHWEKAPFEPYALPKSINYTVVCPDIDPLTCAAADFFQQLGTGESTSLSIVKEVMLKHDRNWLGTHLPQSLGNQMDTDAGRLSSSGFVLLDCPQSMKIESNNTSLLGSLSDYFLSLSNGWNVNSYLKSLSKALKGLKLGSSLYTNQKEGSGSPCMVVYIVCPFPDPSAVLRTIVESSIALGSVIQSDRERRSILNSQVARAFGSSTAVDEASISHIPVLSGFSVPKLVLQVVSVDSIFRITSPSFNELVILKDTAFSVYNKARRISRGMPNDAIFSSSLSSRSSSALTSMSSISGIWKDCGGSRMTGSTHPRDGDIDVSLRTSGWDTSTSWQIPRSGGLSCDPSRNGDFYLNDEIFYLFEPLFILSEPGSVERGVSPTFGSLGSESSKPIPEDGGRGSGPGMNSMEGITSGSSSQGDASQLEGKAIPSLHCCYGWTEDWRWLVSIWTDARVLQQGCQILQACSSPDNGSFKPRDFVITRIGNFFELEYQEWQKAIYSAGGPEIKKWPIQLRRSAPSGIATNSNGSSLQQQDLSLIQERASSTSTLYSSHSKPSTFVKGSIGQSAGRKQIMGGQTISGTPRGLFQWVHSISFASVSLDHSLHFVLPAELVSADTDLHGYMHNYAGGGQNSTGMSSVNYIEGFTPVKSLGSTAFSYMMIPSPNMRFLHPSPLQLPTCLTAESPPLAHLLQSKGCAIPLSTGFVVSKAVPSMRKDSRINMKEEWPSVLSVSLIDYYGGYDNAHDRILQGIMKQGGGTKETRDFEVESHLILESIAAELHALSWMTVSPAYLDRRTALPFHCDMVLRLRRLLHFADKELRQEFKTMQKNADH
Length2638
PositionKinase
OrganismArabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Arabidopsis.
Aromaticity0.09
Grand average of hydropathy-0.248
Instability index47.25
Isoelectric point5.80
Molecular weight288681.56
Publications
PubMed=21478890

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26222
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     409.47|     187|     439|    1515|    1808|       1
---------------------------------------------------------------------------
 1044- 1139 (63.70/ 6.28)	LPHN...QCPEPS..VGSKDHRKGQPDLL...................................................................................................svcekkfiypaeavlvpilqsafakfslkragdfdfLGASENKSDGFYEKNDY..NSSGSSRNSSISSTSSASS......................................................................................................................................................................................................................................................................................................................................................................................................................................................................
 1539- 1591 ( 5.14/18.09)	..........................................................................................................................................................................................................gsgwrmtsrtgdldadadsltcrqsgltsnddrpkmgskrprtgmaesfgqvgiendqvgwdwdaddddddrevgmdikallsefgdfgdffendalpfgeppgtaeshalifppdsadvgsspvdmmdvsdqivlpvgfssfesfnpvppiidecliksqevlnssitsvpsyqmsisstsefdhlmkaeammtfapeygaveapmseisstyfkspylpkshkvessnsrtsnyvygatppttdsdgagnkilfgskscignndgrtlfhsrehytqvegrkdqhdklptvisdnnstkegvshskhskhsaanavkvvqgkktdgisavvrtllssktllatdvgnvmfqafmcrmrhtsskhsspvsltrlsgnfflnqlpnepstltdnisarnEIYKKDI.P.TRIAGDFdggmldsHMSAPVGVWRTVSVPKTAKPASSPNiEAGSS
 1592- 1745 (209.96/258.92)	LPHS...SFSEDS..LLSYGQRQPLHELLD.GISLLVQQATSFVDLALDSDCGDGPYGWLA...LEELWR..RELSCGPSAGHAGCGGTLASCHSldiagVKLVDPLSTevfPSSVI.TLLQSDIktA....................................LKSAFGQSDGPLSVTDWckGRNQSGDGGSISEGSTAES......................................................................................................................................................................................................................................................................................................................................................................................................................................................................
 1830- 1876 ( 8.32/41.25)	.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................alsevngvkisdvsnaidggkgeetaqsldiyssellrptlfvlpspailvgyqddwlkistnslphwekapfepyalpksinyTVVCPDIdPlTCAAADF.......FQQLGTGESTSLSIVKEVMLKHDRN.WLGTH
 1877- 1997 (122.34/ 0.00)	LPQSlgnQMDTDAgrLSSSG.....FVLLDcPQSMKIESNNTSLLGSLSDYFLSLSNGWNVnsyLKSLSKalKGLKLGSSLYTNQKEGSGSPCMV.....VYIVCPFPD...PSAVLrTIVESSI..A....................................LGSVI.QSD...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     488.03|     157|     384|     295|     467|       2
---------------------------------------------------------------------------
  295-  467 (255.40/173.99)	PLYS.RVVEAAPSkvivLP..ASGKLRVQLREQDISWMDFL.SNAKTHLSGENYYRPIHLPVASVinILFSSGTTGEPKAI..PWTQlspirSACDGWahlDVQVGnTYCWPTNLG.WVMGPTLiFSCFLTGATLA...LYQGSPLGRGFGKFDAGVMVL.GTVPSLVKTWKRT..NCME....GLNWTK
  683-  856 (232.63/126.89)	PLFKvSFVKIVPE....FPrtASNKLLRRGGLHNVSWFQLLpSETELNPGSDRSSRAEQNDVATY..LVLSSHLRLQKEGFltTWTN.....SFVGPW...DPSQG.LYNPDEKIKlWLFLPGR.HSSITDKAQAAvskLRVNMPVVYAYLVVASGIWVApGDSEEISVAFSQSlrNCIEralsGLSYMR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     116.88|      34|     441|    2052|    2152|       3
---------------------------------------------------------------------------
 1142- 1176 (60.98/ 9.29)	GWRMTSRTGDLDADADsLTCRQSGL.TSND.DRPKMG
 2112- 2147 (55.90/121.90)	GSRMTGSTHPRDGDID.VSLRTSGWdTSTSwQIPRSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     197.46|      48|     441|    1756|    1808|       4
---------------------------------------------------------------------------
 1756- 1803 (83.31/44.57)	SDVSNAI..DGGKGE.............ETAQSLDIYSSE...LLRPTLFVLPSPAIL..VGYQDDWL
 2194- 2249 (53.59/24.19)	SESSKPIpeDGGRGSgpgmnsmegitsgSSSQG.D..ASQ...LEGK...AIPSLHCC..YGWTEDW.
 2253- 2302 (60.55/31.71)	..VSIWT..DARVLQ.............QGCQILQACSSPdngSFKPRDFVITRIGNFfeLEYQ.EWQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.88|      21|     441|     549|     569|       5
---------------------------------------------------------------------------
  549-  569 (37.09/20.46)	GEVGLLPQHLGATDRLLNANH
  992- 1012 (37.79/20.99)	GNLRTSSGYVGRGSRLINGNH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.07|      11|     128|    1086|    1101|       7
---------------------------------------------------------------------------
 1086- 1101 (15.73/19.50)	LQSAFAKFslkraGDF
 1220- 1230 (22.34/12.47)	LLSEFGDF.....GDF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26222 with Med13 domain of Kingdom Viridiplantae
Unable to open file!