<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26220

Description DNA helicase
SequenceMSWSHLPEVQKPRGPQTNWSEHAKALESSSSVTKFLSSNVLYALESQKPRDMSARSIAFPSVNVHTLAHPQISKAWRALSSLSINNAYLRPGVTPPIDDGGTNGSYSAREGSTVKVISSTGGSVYSSSRQNQNAMNVSGTGRSFHSFPSSVLGADKMIAEKFPLGNDEVRESEPSFTHLNGVEKSFRNSAFPPEQFESGKACLGDMDDDDILKNIDVDQIVMEHYHSTSTPQPSVSNFSLRTPPAPPVDRSASRLEEECYLPPELCSNCSHGIKLGLCPEASTHVEQMKDVLLAISNELLDDAADLSPYRVEQLRQERLQLKKQIQQLENHIRDKERQKSQFSSSTATRTFQYETPKSTNYKMDQPQTDFRAHLSDQGRYAGDSWNTPRDSSFSVDRYGLSTAPVEREPYVPKIIDVTYTEGSNDKKWSSREFPWTRKLEVNNKKVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALICGGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLKIFQELNSEHSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQSLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVSERLQEFGHKTAFYHGSMEPEQRAFIQTQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYGYGDYIRVKHMISQGGVDQSPMATGYNRVASLGRILETNTENLLRMVSYCENEVECRRFLQLVHFGEKFDSTNCKKTCDNCCSSQSLIDKDVTLITRQLVELVKQTGERFSSAHILEVYRGSLNQMVKKHRHETLQLHGVGKHLSKIEVSRILHYLVTEDILVEDVRKSDMYGSVSSLLKVNNAKATLLFSGSQTIMMKFPSSVKVLKPSKQGATAAKGPLTSEKQSTLPLTTEDAPPKDLNLSANMYTALRKLRTALVKEAPDGVMAYHIFINSTLQQISRRIPRTKEELLEINGLGKAKVSKYGDRLLETIETTVNEYYGTNKKDSIISNDSPDSGKRRRDENISPNVAEDDDFEVSPSQSCKKTVRNKSNEVLHGECVDGDRRGMVMEKLDFDFRDEDVSEIRPEGRVLPW
Length1189
PositionUnknown
OrganismArabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Arabidopsis.
Aromaticity0.07
Grand average of hydropathy-0.515
Instability index49.60
Isoelectric point7.04
Molecular weight133477.39
Publications
PubMed=21478890

Function

Annotated function 
GO - Cellular Component
plasmodesma	GO:0009506	IEA:EnsemblPlants

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:EnsemblPlants
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
cellular response to abscisic acid stimulus	GO:0071215	IEA:EnsemblPlants
cellular response to cold	GO:0070417	IEA:EnsemblPlants
DNA replication	GO:0006260	IEA:InterPro
double-strand break repair via homologous recombination	GO:0000724	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26220
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.36|      17|      36|       8|      28|       1
---------------------------------------------------------------------------
    8-   28 (25.33/24.11)	EVQKPRgpqtNWSEHAKALES
   45-   61 (31.03/17.18)	ESQKPR....DMSARSIAFPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.41|      13|      35|     353|     365|       2
---------------------------------------------------------------------------
  353-  365 (23.97/15.72)	YETPKSTNYKMDQ
  385-  397 (24.44/16.19)	WNTPRDSSFSVDR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     141.89|      39|      41|     129|     169|       6
---------------------------------------------------------------------------
  101-  135 (48.49/30.94)	...GTNGSYS..AREGSTV...KVISSTGGSV...YSSSRQNQNAM
  136-  176 (60.63/47.68)	NVSGTGRSFH..SFPSSVLgaDKMIAEKFPLG...NDEVRESEPSF
  178-  211 (32.77/18.21)	HLNGVEKSFRnsAFPP.....EQFESGKACLGdmdDDDI.......
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26220 with Med34 domain of Kingdom Viridiplantae
Unable to open file!