<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26213

Description Uncharacterized protein
SequenceMADAGDNQRRSAEKESKSIEETKENEDLGSGINDTGHHVYYYNQGDEEVREYLKQERLKDVEMRRRRHETESRSIEKTKGTHPDERTDRVQKTDSRSLPEKKGKEDSVLRKNEAGQIHDYKHSTVDTRECLPQQRQLRDVVGMHRRRRETESRFWHQGRDRSPIWRENEYRMRFDERTQDWLDSDYESRWRVHERTPDWDWRDSESRMRFDERTQDRRGSESQWVFDERTQRRHEPVRPGEECWCLRCRNGRSCRYNHPTQLPQYFRRGYCKLGSFCKFQHIRDRDVAETMYQDWRFDERTHRRHEIEYSGFRPEKREIREHENPQKQIQRNTERQGTVAQDNVQFHQQQEEEMQRPQSHTTQQQQSVQQHQLLASHFNLYPLAEKLTDVIEAGTRDQNSDALIQRNTERQRMVNRAIERQDMEPLIDAIVRGIMQERREKEANLQQQRLQEIRENHSVDAHDQQKKQELGFK
Length473
PositionMiddle
OrganismArabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Arabidopsis.
Aromaticity0.07
Grand average of hydropathy-1.640
Instability index73.33
Isoelectric point7.09
Molecular weight57683.63
Publications
PubMed=21478890

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
metal ion binding	GO:0046872	IEA:UniProtKB-KW

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26213
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     167.86|      32|      33|     165|     196|       1
---------------------------------------------------------------------------
  165-  191 (50.87/20.53)	.........W..R.ENEY........RMRFDERTQ........................DWLDSDYESRWR
  192-  224 (47.08/18.50)	VHERTpdwdW..R.DSES........RMRFDERTQ........................DRRGS..ESQW.
  239-  296 (33.05/10.97)	PGEEC....WclRcRNGR........SCRYNHPTQlpqyfrrgycklgsfckfqhirdrDVAETMYQD.WR
  297-  338 (36.86/13.02)	FDERT..hrR..H.EIEYsgfrpekrEIREHENPQ........................KQIQRNTERQGT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      56.84|      11|      54|      13|      23|       2
---------------------------------------------------------------------------
   13-   23 (18.85/11.69)	EKESKSIEETK
   69-   79 (19.71/12.55)	ETESRSIEKTK
   92-  102 (18.27/11.11)	KTDSRSLPEKK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.01|      35|      77|      33|      68|       3
---------------------------------------------------------------------------
   33-   68 (61.22/34.91)	NDTGHhVYYYNQGDEEVREYLKQER.LKDV.EMRRRRH
  112-  148 (57.78/28.64)	NEAGQ.IHDYKHSTVDTRECLPQQRqLRDVvGMHRRRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.84|      22|      98|     343|     366|       4
---------------------------------------------------------------------------
  341-  364 (34.65/16.19)	QDNVQfhQQQEEEMQRPQS...HTTQQ
  442-  466 (28.19/ 8.42)	EANLQ..QQRLQEIRENHSvdaHDQQK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26213 with Med9 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EIEYSGFRPEKREIREHENPQKQIQRNTERQGTVAQDNVQFHQQQEEEMQRPQSHTTQQQQSVQQHQLLA
2) EKLTDVIEAGTRDQNSDALIQRNTERQRMVNRAIERQD
3) MADAGDNQRRSAEKESKSIEETKENEDLGSGINDTGHHVYYYNQGDEEVREYLKQERLKDVEMRRRRHETESRSIEKTKGTHPDERTDRVQKTDSRSLPEKKGKEDSVLRKNEAGQIHDYKHSTVDTRECLPQQRQLRDVVGM
4) PLIDAIVRGIMQERREKEANLQQQRLQEIRENHSVDAHDQQKKQELGFK
306
385
1
425
375
422
143
473










Molecular Recognition Features






MoRF SequenceStartStop




NANANA