<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26210

Description Uncharacterized protein
SequenceMDNNNWRPSLPNGEPAMDSGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGAVNQTDYLRKISMKMLTMETKSQNAAGSSASIPAANNGTSIDSIPTNQGHLLPGSLPTNQSQAPQPLLSQTMQNNSASGMTGSTALPSSMPPVSSITNNNATSVVNQNANMQNVAGMLQDSSGQHGLSSNMFSGSQRQMLGRPHAMSSQQQQQPYLYQQQLQQQLLKQNFQSGNVPNPNSLLPSHIQQQQQNVLQPNQLHSSQQPGVPTSATQPSTVNSAPLQGLHTNQQSSPQLSSQQTTQSMLRQHQSSMLRQHPQSQQASGIHQQQTSLPQQSISPLQQQQTQIMRQQAANSSGIQQKQMMGQHVVGDMQQQHQQRLLNQQNNIMNIQQQQSQQQPLQQPLQQPQQQQKQQPPAQQQLMSQQNSLQATHQQPLGPQSNVAGLQQPQQQMLNSQVGNSSLQNNQHSVHMLSQPTVGLQRTHQAGHGLFSSQGQQSQNQPSQQQMMPQLQSHHQQLGLQQQPNLLQQDVQQRLQASGQVTGSLLPPQNVVDQQRQLYQSQRTLPEMPSSSLDSTAQTESANGGDWQEEVYQKIKSMKETYLPDLNEIYQRVAAKLQQDSLPQQQRSDQFEKLKQFKTMLERMIQFLSVSKSNIMPALKDKVAYYEKQIIGFLNMHRPRKPVQQGQLPQSQMQPMQQPQSQTVQDQSHDNQTNQQMQSMSMQGAGPRAQQSSLPNMQNNVLSSRPGVSASQQNIPSTIPASSLELGQGNALNTGQQVAMGSMQQNTSQQVNNSSASAQSGLSTLQTNVNQPQLSSSLLQHQHLKQQQDQQMTQQFKQQFQQRQMQQQQLQARQQQQQQQLQARQQAAQLQQMNDMNDLTSRQGMNVSRGMFQQHSLQGQRATYPLQQLKPGAVSSPQLLQGASPQMSQQHLSPQVDQKNLSTVNKMGTPLQPANSPFVVPSPSTPLAPSPMQVDSEKPGASSLSMGNIARQQATGMQGVVQSLAIGTPGISASPLLQEFTSPDGNILNPLTITSGKPSATELPIERLIRAVKSSSPQVLSSAVSDIGSVVSMVDRIAGSAPGNGSRASVGEDLVAMTKCRLQARNFMTQEGMMATKKMKRHTTAMPLSVASLGGSVGDNYKQFASSETSDLESTATSDGKKARTETEHALLEEIKEINQRLIDTVVEISDDEDAADPSEGAISSIGCEGTTVRFSFIAVSLSPALKAHLSSTQMSPIQPLRLLVPCSYPNGSPSLLDKLPVETSKENEDLSSKAMARFNILLRSLSQPMSLKDIAKTWDACARAVICEYAQQFGGGTFSSKYGTWEKYVAAS
Length1343
PositionTail
OrganismArabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Arabidopsis.
Aromaticity0.03
Grand average of hydropathy-0.764
Instability index71.84
Isoelectric point9.27
Molecular weight147340.03
Publications
PubMed=21478890

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26210
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     459.41|      57|      57|     457|     513|       6
---------------------------------------------------------------------------
  116-  164 (51.41/ 9.83)	PTNQ..GHLL.....PGSLPTNQ..........SQaPQPLLSQTMQnnSA......SGMTGSTALPS.....SMPP..V
  171-  228 (46.08/ 7.87)	NATSvvNQNANMQNVAGMLQDSSgqHglSSNMFS.....GSQR.QM..LG....rpHAM.SSQ.QQQ.....QPYL..Y
  258-  307 (53.74/10.68)	QQQQ..QNVL.........QPNQ.lH..SSQ...Q.PGVPTSATQP..STvnsaplQGLHTN..QQS.....SPQL..S
  457-  513 (104.71/29.36)	QQPQ..QQMLNSQVGNSSLQNNQ..H..SVHMLSQ.PTVGLQRTHQ..AG......HGLFSSQGQQS.....QNQP..S
  707-  743 (45.11/ 7.52)	QQPQ..SQTVQDQSHDN..QTNQ..QmqSMSM....QGAG.PRAQQ..S.............................S
  745-  793 (56.50/11.69)	PNMQ..NNVLSSRPGVSASQQNI..P..S....TI.PASSLE......LG......QGNALNTGQQV.....AMGS..M
  864-  922 (56.19/11.58)	QQQQ..QQQLQARQQAAQLQQMN..D..MNDLTSR.QGMNVSRGMF..QQ......HSL...QGQRAtyplqQLKP..G
  923-  970 (45.67/ 7.72)	AVSS..PQLLQ...GASPQMSQQ..H..LSPQVDQ.K..NLSTVNK..MG......TPL......QP.....ANSPfvV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     275.07|      56|      56|     981|    1036|       7
---------------------------------------------------------------------------
  981- 1023 (62.21/37.28)	.......................................PM....QVD...SEKPGASS................L..SMGN..IA....RQQATGMQGVV....QSLAIGTPGI..SA
 1024- 1065 (41.20/21.63)	SP.LLQ.EFTSPDGN.....................ilnPL....TIT...SGKPSATE................L..PIER..LI....RA.......................vkSS
 1066- 1125 (36.79/18.34)	SPqVLS.SAVSDIGS......................vvSM.....VDriaGSAPGNGS...............rA..SVGEdlVAmtkcRLQARNF..MT....QE......GM..MA
 1126- 1173 (49.05/27.47)	TK.KMK.RHTTA..........................mPL....SV..........AS................LggSVGD..NY....KQFASSETSDL....ESTAT.SDGK..KA
 1179- 1232 (55.00/31.91)	HA.LLE.EIKEINQR........................LIdtvvEI....SDDEDAAD................P..SEGA..IS.......SIGCEGT......TVRFSFIAV..SL
 1233- 1328 (30.83/13.89)	SP.ALKaHLSSTQMSpiqplrllvpcsypngspslldklPV....ETS...KENEDLSSkamarfnillrslsqpM..SLKD..IA....KTWDACARAVIceyaQQFGGGT.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.38|      11|      15|       1|      11|       9
---------------------------------------------------------------------------
    1-   11 (24.58/14.49)	MDNNNWRPSLP
   17-   27 (23.80/13.79)	MDSGDWRTQLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     102.69|      23|     128|     550|     572|      10
---------------------------------------------------------------------------
  550-  572 (41.62/17.65)	QVTGSL..LPPQNVVDQQRQLYQSQ
  626-  648 (31.55/11.56)	KLQQDS..LPQQQRSDQFEKLKQFK
  679-  702 (29.53/10.34)	QIIGFLnmHRPRKPV.QQGQLPQSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      95.47|      20|     487|     308|     327|      13
---------------------------------------------------------------------------
  308-  327 (36.37/16.42)	SQQTTQSMLRQHQ.SSMLRQH
  360-  378 (33.88/14.62)	RQQAANSSGIQ.Q.KQMMGQH
  811-  831 (25.22/ 8.37)	GLSTLQTNVNQPQlSSSLLQH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.68|      15|      19|      48|      64|      15
---------------------------------------------------------------------------
   48-   64 (22.45/22.05)	FSGpeGINE...LRRIAARF
   69-   86 (22.23/13.24)	FSG..AVNQtdyLRKISMKM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26210 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ASGQVTGSLLPPQNVVDQQRQLYQSQRTLPEMPSSSLDSTAQTESANGGDWQEE
2) LKQNFQSGNVPNPNSLLPSHIQQQQQNVLQPNQLHSSQQPGVPTSATQPSTVNSAPLQGLHTNQQSSPQLSSQQTTQSMLRQHQSSMLRQHPQSQQASGIHQQQTSLPQQSISPLQQQQTQIMRQQAANSSGIQQKQMMGQHVVGDMQQQHQQRLLNQQNNIMNIQQQQSQQQPLQQPLQQPQQQQKQQPPAQQQLMSQQNSLQATHQQPLGPQSNVAGLQQPQQQMLNSQVGNSSLQNNQHSVHMLSQPTVGLQRTHQAGHGLFSSQGQQSQNQPSQQQMMPQLQSHHQQLGLQQQPNLLQQDVQQR
3) MDNNNWRPSLPNGEPAMDSGDWRTQLPPDSRQKIVNKIMETL
4) MHRPRKPVQQGQLPQSQMQPMQQPQSQTVQDQSHDNQTNQQMQSMSMQGAGPRAQQSSLPNMQNNVLSSRPGVSASQQNIPSTIPASSLELGQGNALNTGQQVAMGSMQQNTSQQVNNSSASAQSGLSTLQTNVNQPQLSSSLLQHQHLKQQQDQQMTQQFKQQFQQRQMQQQQLQARQQQQQQQLQARQQAAQLQQMNDMNDLTSRQGMNVSRGMFQQHSLQGQRATYPLQQLKPGAVSSPQLLQGASPQMSQQHLSPQVDQKNLSTVNKMGTPLQPANSPFVVPSPSTPLAPSPMQVDSEKPGASSLSMGNIARQ
5) RKISMKMLTMETKSQNAAGSSASIPAANNGTSIDSIPTNQGHLLPGSLPTNQSQAPQPLLSQTMQNNSASGMTGSTALPSSMPPVSSITNNNATSVVNQNANMQNVAGMLQDSSGQHGLSSNMFSGSQRQMLGRPHAMSSQQQQQPYLYQQQLQQ
547
237
1
686
80
600
544
42
1002
234










Molecular Recognition Features






MoRF SequenceStartStop




NANANA