<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26207

Description Uncharacterized protein
SequenceMSSEVKQLIVVAEGTAALGPYWQTIVSDYLEKIIRSFCGSELNGERNPVSTVELSLVIFNSHGSYCACLVQRSGWTRDVDIFLHWLSSIQFGGGGFNEVATAEGLAEALMMFSPPSGQAQPSNDLKRHCILITASNPHTLPTPVFRPRLQSVERNENGDAQAESRLSDAETVASYFAKCSVSLSVVCPKQLPKIRALYNAGKLNPQSADLSIDTAKNTFYLVLISENFVEARAALSHSATNLPQTQSPVKVDRATVAPSLPVTGQPPAPVTSANGPIQNRQPVSVGPVPTATVKVEPSTVTSMAPVPNFPHIPSVARPATQPIPSIQTSSASPVSQDMVTNAENAPDIKPVVVGGMTPPLRTGPPGGANVNLLNNLSQVRQVMSSAALAGAASSAGQSAVAMHMSNMISTGMATSLPPSQTVFSTGQQGITSMAGSGALMGSAQTGQSPGPNNAFSPQTTPNVASNLGVSQPMQGMNQGSHSGAMMQGGISMNQNIVSGLGQGNVSSGTGGMMPTPGVGQQAQSGIQQLGGSNSSAPNMQLSQPSSGALQTSQSKYVKVWEGNLSGQRQGQPVLITRLEGYRSASASDSLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMSQHGFLGQLQDKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQIPNPQQQQQQQLQQQHQQQQQIQQQQQQQQHLQQQQMPQLQQQQQQQHQQQQMPQLQQQQQHQLSQLQHHQQQQQQQQQQQQQHQLTQLQHHHQQQQTSPLNQMQQQTSPLNQMQQQQQPQQMVMGGQAFAQAAGRSQQGGGGGQPNMPGAGFMG
Length832
PositionUnknown
OrganismArabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Arabidopsis.
Aromaticity0.04
Grand average of hydropathy-0.450
Instability index61.44
Isoelectric point8.83
Molecular weight89098.22
Publications
PubMed=21478890

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26207
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     112.12|      19|      19|     710|     728|       1
---------------------------------------------------------------------------
  675-  692 (31.35/ 6.39)	.KPQIPNPQQQQQQQLQQQ
  710-  728 (45.19/12.17)	QQQQMPQLQQQQQQQHQQQ
  756-  773 (35.57/ 8.15)	QQQQQHQLTQLQHH.HQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     165.37|      40|      44|     249|     288|       2
---------------------------------------------------------------------------
  249-  288 (76.66/34.96)	VKVDRATVAPSLPVTGQP..P..APVTSANGPIQNRQPVSVGPV
  293-  334 (55.66/23.32)	VKVEPSTVTSMAPVPNFPhiP..SVARPATQPIPSIQTSSASPV
  357-  388 (33.05/10.78)	........TPPLR.TG.P..PggANVNLLNNLSQVRQVMSSAAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     131.66|      39|      44|     436|     478|       3
---------------------------------------------------------------------------
  436-  478 (63.68/27.89)	SGALMgsaQTGQSPgPNNAFSPQTTPNVASNLGVSQPMQGMNQ
  482-  520 (67.97/22.26)	SGAMM...QGGISM.NQNIVSGLGQGNVSSGTGGMMPTPGVGQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.34|      26|      43|     729|     755|       4
---------------------------------------------------------------------------
  729-  755 (49.34/22.05)	QMPQLQQQQQhQLSQLQHHQQQQQQQQ
  774-  799 (52.01/19.93)	QTSPLNQMQQ.QTSPLNQMQQQQQPQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.19|      10|      16|     803|     812|       6
---------------------------------------------------------------------------
  803-  812 (18.67/ 8.41)	GGQAFAQAAG
  820-  829 (21.52/10.99)	GGQPNMPGAG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26207 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LSHSATNLPQTQSPVKVDRATVAPSLPVTGQPPAPVTSANGPIQNRQPVSVGPVPTATVKVEPSTVTSMAPVPNFPHIPSVARPATQPIPSIQTSSASPVSQDMVTNAENAPDIKPVVVGGMTPPLRTGPPGGANVNLLNNL
2) MAGSGALMGSAQTGQSPGPNNAFSPQTTPNVASNLGVSQPMQGMNQGSHSGAMMQGGISMN
3) NIVSGLGQGNVSSGTGGMMPTPGVGQQAQSGIQQLGGSNSSAPNMQLSQPSSGA
4) QQQQMPQLQQQQQQQHQQQQMPQLQQQQQHQLSQLQHHQQQQQQQQQQQQQHQLTQLQHHHQQQQTSPLNQMQQQTSPLNQMQQQQQPQQMVMGGQAFAQAAGRSQQGGGGGQPNMPGAGFMG
235
433
495
710
376
493
548
832










Molecular Recognition Features






MoRF SequenceStartStop




1) QAFAQAAG
805
812