<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26206

Description Uncharacterized protein
SequenceMQGESSNDMFWGSVDIGDLEPTPLSGSLEDQVIPPNLEEGGDFDMPVEDFLDLDPFPLEGMPLEGDDWLSTQSLPEGSGNKPGGSPRAGNVSMDSSAVGGSGGASTRPGAYVPPPGALGASGAGGLAVSSGLQQQQQQGLPQLQTQLSVGGLTPLGNGASGVAPINPADPIPEGNPALLQNVINHQLGPMPRLLNGLVSGCTVVVPAPSVAAVPPAGGGSRGSGTAQDGTAAAAAAAGAAPPAFSNKRTKDECGDGDDGRPEKKMALGGGGGGDRSGSSSPTMSPSMAAAAAAAAAAATSGSNDAMLGSENGGGASSSPATAAPPASSNLLARPASADFRHGGGEELMARLKAKVGRLFSLSAEYTHVRTGVVPENGSPAALGGGEVGKKQEAGLTNGGAAASVAATTTTVGTTTAGDVKSDVGGGGLRRVLARVKAVRAGHFVVHIKFDVAGSNECRPCDVSVLSWNEAQEGESASTGGADARVKVEGGGQSGGGFMDTVHGSKPWRTSQHTAFVRVSGHAFQALHGYVNKRTDGNVGEALVSFLTWMANYDRVFQDPCTIANKLVATDSGTGEPLPPTLRTPDGSALLAESLAGTPQREPQSPASSQAASAAAAAGTGVATAEA
Length626
PositionTail
OrganismEctocarpus siliculosus (Brown alga) (Conferva siliculosa)
KingdomPhaeophyceae
LineageEukaryota> Sar> Stramenopiles> Ochrophyta> PX clade> Phaeophyceae> Ectocarpales> Ectocarpaceae> Ectocarpus.
Aromaticity0.04
Grand average of hydropathy-0.235
Instability index50.06
Isoelectric point4.85
Molecular weight61858.51
Publications
PubMed=20520714

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26206
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     245.83|      48|      51|     212|     259|       1
---------------------------------------------------------------------------
   75-  106 (32.71/ 6.45)	......................PEG......S.GNKP....GG..........SPRAG.............NVSMdSSAVGGS...............G.GAST
  111-  177 (37.45/ 8.52)	YV...................PPPG......AlGASG....AGglavssglqqQQQQGlpqlqtqlsvgglTPLG.NGASGVAPinPA.......DPIPEGNPA
  212-  259 (86.53/29.96)	AV...................PPAG......G.GSRG....SG..........TAQDG.............TAAA.AAAAGAAP..PAFSNKRTKDECGDGDDG
  373-  429 (46.09/12.29)	.V...................PENGspaalgG.GEVGkkqeAG..........LTNGG.............AAAS.VAATTTTV..GTTTAGDVKSDVGGGGLR
  437-  494 (43.05/10.96)	AVraghfvvhikfdvagsnecRPCD......V.SVLS....WN..........EAQEG.............ESAS.TGGADA..........RVKVE.GGGQSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     164.36|      39|      41|     269|     307|       2
---------------------------------------------------------------------------
  266-  304 (66.95/24.33)	ALGGGGGGDRSGSSSPTMSPSMAAAAAAAAAAATSGSND
  305-  338 (56.70/19.53)	AMLGSENG..GGASS...SPATAAPPASSNLLARPASAD
  586-  618 (40.70/12.05)	...GSALLAESLAGTPQREPQSPASSQAASAAAAAG...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.88|      15|      33|      15|      29|       3
---------------------------------------------------------------------------
   15-   29 (28.79/16.82)	DIGDLEPTPLSG.SLE
   49-   64 (26.09/14.46)	DFLDLDPFPLEGmPLE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26206 with Med27 domain of Kingdom Phaeophyceae
Unable to open file!