<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26175

Description Uncharacterized protein
SequenceMAANYWASSQRLHWQMSRQRLAEIRSALEAQDPKTVQQYPLPELRHLSIYFNSQIVRLGRRMQTRQQALATAQLYIRRFYAKVPIRDTNPYLVMATCLYLALKMEECPQHIRIVVSEARTCWPDVMPSDTAKLAECEFYLISEMNSYLIVHHPYRTLQDLTPVLSLTSEENSTSWQVINDSCLTDLPLLYPPHIIALTAIFLSVVLKTSLPQASIHAAASSATVATTAAAAATSAVRDPRRTHTFLAPTHTPSPQCSLSSLPLSFSACAPIPVCFLYSPKASLPLILLCLSFPPPSPHSQTQTSSPPQPSLLLFLLPPPAPLFIHIQKHTSHPSKVSIIDTIRCCPVVCLSVCYNLIIATLLHPSFLLPSSHLALHRVVLKPKNSNASKKKQTHTTHSLFNPLLGQLFQAIASTFP
Length416
PositionKinase
OrganismTuber melanosporum (strain Mel28) (Perigord black truffle)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Pezizomycetes> Pezizales> Tuberaceae> Tuber.
Aromaticity0.07
Grand average of hydropathy0.093
Instability index60.49
Isoelectric point9.23
Molecular weight46261.43
Publications
PubMed=20348908

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
cyclin-dependent protein serine/threonine kinase regulator activity	GO:0016538	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26175
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     124.40|      28|      53|     308|     335|       1
---------------------------------------------------------------------------
  284-  306 (31.56/13.10)	.PLILLCLsFPPPSP...H...SQTQTSSP..
  308-  335 (55.36/28.68)	QPSLLLFL.LPPPAPLFIH...IQKHTSHPSK
  363-  389 (37.49/16.98)	HPSFLL.....PSSHLALHrvvLKPKNSNASK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     111.78|      35|      53|      85|     122|       3
---------------------------------------------------------------------------
   85-  122 (49.93/41.55)	IRDTNPYLVMATcLYLALKmEECPqHIRIVVSEARTCW
  141-  175 (61.85/35.72)	ISEMNSYLIVHH.PYRTLQ.DLTP.VLSLTSEENSTSW
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26175 with CycC domain of Kingdom Fungi
Unable to open file!