<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26163

Description Uncharacterized protein
SequenceMQRAEDREVDDKDDRGGGRPGLLTSTSTIFNTITPTQHPPSKRKREGTHHEEGDEGEDEQEEDQEERGLHEEIMPPYKSKVRVLEEYHIIGFISSGTYGRVYKARSKLPGNTKEYAIKKFKPDKEGEIIQYTGISQSACREMALCSELSHENVIHLHEIILEDKCIYMVFEYAEHDLLQIVHYHSHPERRPIPEATIKSVLWQLLNGVSYLHQNWVLHRDLKPANIMVTAAGEVKIGDLGLARLFWKPLQSLYAGDKVVVTIWYRAPELLLGSKHYTAAIDLWAVGCIFAELLALRPIFKGEEAKMEKKSTVPFQRNQMQKIIEILGTPNKERWPAVVQQPEYNQLQAFKQYTNNLEAWYHQIGATNALGFQLLSGLLNYDPTQRLTAQSALEHPYFSEGAKLTLNAFEGQSFDYPHRRVSQDDNDISLPGTKRSGLPDDSLGGSRAKRLKEG
Length453
PositionKinase
OrganismTuber melanosporum (strain Mel28) (Perigord black truffle)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Pezizomycetes> Pezizales> Tuberaceae> Tuber.
Aromaticity0.09
Grand average of hydropathy-0.604
Instability index48.12
Isoelectric point6.08
Molecular weight51631.79
Publications
PubMed=20348908

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblFungi

GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
cyclin-dependent protein serine/threonine kinase activity	GO:0004693	IEA:EnsemblFungi
RNA polymerase II CTD heptapeptide repeat kinase activity	GO:0008353	IEA:EnsemblFungi

GO - Biological Process
negative regulation of filamentous growth	GO:0060258	IEA:EnsemblFungi
negative regulation of transcription by RNA polymerase II	GO:0000122	IEA:EnsemblFungi
nuclear-transcribed mRNA catabolic process, non-stop decay	GO:0070481	IEA:EnsemblFungi
phosphorylation of RNA polymerase II C-terminal domain	GO:0070816	IEA:EnsemblFungi
positive regulation of transcription from RNA polymerase II promoter by galactose	GO:0000435	IEA:EnsemblFungi
protein destabilization	GO:0031648	IEA:EnsemblFungi
response to oxidative stress	GO:0006979	IEA:EnsemblFungi









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26163
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.78|      12|      51|       5|      16|       1
---------------------------------------------------------------------------
    5-   16 (21.49/13.49)	EDREVDDKDDRG
   57-   68 (21.28/13.29)	EDEQEEDQEERG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.89|      17|      73|     267|     283|       3
---------------------------------------------------------------------------
  267-  283 (31.65/20.31)	PEL..LLGSKHYTAAIDLW
  341-  359 (28.24/17.42)	PEYnqLQAFKQYTNNLEAW
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26163 with CDK8 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MQRAEDREVDDKDDRGGGRPGLLTSTSTIFNTITPTQHPPSKRKREGTHHEEGDEGEDEQEEDQEERGLHEEIMP
2) RVSQDDNDISLPGTKRSGLPDDSLGGSRAKRLKEG
1
419
75
453










Molecular Recognition Features






MoRF SequenceStartStop




1) GRPGLLTSTSTIFNTITPTQHP
2) LGGSRAKRLKEG
3) MQRAEDREVDDKD
18
442
1
39
453
13