<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26160
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MIHIFNHPHPAMSSSSGTSLRAQTYHGLFRKCLLKRTPVDTFGEYVSQLLLKSPLPSSSICPILLSPSVSSRVDPLHLEYIQCLVEKDIVSLPDVLVALLCTSSARPAVSTSSSSGHGATGGGNGMNTNREALEEDIFTVLATVVREHKPRSNDFVWATIQALSDWMEAVMAASGAGMLDEPGDDVSGMTGSMDVGKGRLEALAELTIAIGGNEDVRRILGEGGRKERKLMFQTSLSLFMQYIQVQNPTLAARMDALFRHQQSQQSPQQNRNQRSTKGAETIDGMMMGMGDGADNEPVVWARGGLFVWLNGLLAGRPQVDDEAVIGYLYSRYRNDINTLLVDFVTAVLDVLSNAILRSEAASTLFLLRSFLTNKVPILLSRLSPSPMTASYALSQALLRTDASTLANPPPSSFDPYSRDTSPNADMLFNTLVDLRQEFLFACALHGVVGEEDIQGIIGELPLGALPVAGRYDAGDLMNQCAMDPDRVERLLEEIEGVEGNSGAVVRAVVEIMRNMCEQKETMPLRSICSFLARKTSSLDVMLLFVKPVYLLEPLCELLDTWRYEEDQGEYQPVYEEFGYILLLVTDLTSSSAPNTDSFIPQLLSKGSTSQRIENFESSDKHAQLGGWIREIFEGEGISDGLMSSCRPQDFYRLVPTLFMQSVMACERGVLDIDTLKEGFAFLLEAFLLPSLVGGLGWLGNHLWESHEDISIPVQILHSLLVPSSISSDASEVHKTVISISARHLERVLRELARRGTAGSHQSAVEGLVANLQPYTSFKRNGAATRDELENWTHHAGGGGLVQSLGLAFQSLVNWSTSQGDINIVRPSATYTHRLILATWRVSGARNTVGAIISEVVKCRIQGTAQGYAEDVAMSMILSMGPPTEEGGTGGGGGKMGLLEALRAEEAEESGNEGDKAEALRSVLRKVETQLTPFSPVHQHAAVGGGVDATGGQQPGMGVGGDTQGVDLDLAMGDDGMAGLLGDGGLGEGELMGSGLLGDVSGMELV |
Length | 1005 |
Position | Tail |
Organism | Tuber melanosporum (strain Mel28) (Perigord black truffle) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Pezizomycetes>
Pezizales> Tuberaceae> Tuber.
|
Aromaticity | 0.06 |
Grand average of hydropathy | -0.064 |
Instability index | 44.72 |
Isoelectric point | 4.86 |
Molecular weight | 108370.76 |
Publications | PubMed=20348908
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Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
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GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
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Interaction
Repeat regions
Repeats |
>MDP26160
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 258.94| 85| 91| 804| 894| 1
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800- 890 (129.02/81.56) LVQSLGLaFQSL....VNWSTSQGDINIVRPSATYTHRLILATWRVSGARNTVGAIISEVVKcriQGTAQGYAED...VAMSmiLSMGPPTEEG..GTGG
891- 984 (129.92/66.99) GGGKMGL.LEALraeeAEESGNEGDKAEALRSVLRKVETQLTPFSPVHQHAAVGGGVDATGG...QQPGMGVGGDtqgVDLD..LAMGDDGMAGllGDGG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 711.77| 255| 313| 62| 371| 2
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44- 358 (362.68/296.94) EYVSQL.LLKSPLpsssicPILLSPSVSSrvdPLHLEYI..QCLVEKDIVSLpdvlvallctssARPAVSTSSSSGHGATGGGNGM.....NTNREALeediFT.VLATVVREHKprsndfvwatiqalsdwMEAVMAASGAGMLDEPGD.DVSGMTGSMDVGKGRLEALAELTIAIGGNED.VRRILGEGGR...KERKLMFQTSLS..............LFMQYIQVQNPtLAARMDAL.FRHQQSQQSP...........QQNRNQRStkgAETIDGM...MMGMGDGADN.EPvvWAR.......GGlfvWLNGLLAGRpQVDDeaviGyLYSRYR.ND....INTLLVDFVTA....VLDVlsnAILRS
359- 677 (349.09/195.69) EAASTLfLLRSFL..tnkvPILLSRLSPS...PMTASYAlsQALLRTDASTL............ANPPPSSFDPYSRDTSPNADMLfntlvDLRQEFL....FAcALHGVVGEED.................IQGIIGELPLGALPVAGRyDAGDLMNQCAMDPDRVERLLEEIEGVEGNSGaVVRAVVEIMRnmcEQKETMPLRSICsflarktssldvmlLFVKPVYLLEP.LCELLDTWrYEEDQGEYQPvyeefgyilllVTDLTSSS...APNTDSFipqLLSKGSTSQRiEN..FESsdkhaqlGG...WIREIFEGE.GISD....G.LMSSCRpQDfyrlVPTLFMQSVMAcergVLDI...DTLKE
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