<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26149

Description Uncharacterized protein
SequenceMTVSAAICLAARVRRRRDVLCVFSRVCLAVLAAGSSGRAGEGERRGKDAGEETQAGGAIDDGQSKRAKEKRISEGEDDEEEKMKKKKRRREVVKKLKSRTFGSGVAFGLLLYQPSSPSPSLTLLLLYCPLSLLTTTDCPSSLSVLLLLLTLSITLSLSLTIHCLLSALLQQRRLPQSTLQSLSLYHYLLFHCSTVSMNPPAPSSPRFTLELEFVLSLANPHYLSHLAVAHPQLLGITSSKEKDSNASRDRDATSREKDDSEAFAAYLAYLYDYWRRPEYVQFLSHPGATLRALRLLQEEAFRVAVIRPQARKRTTSQLARRRRTEDLDRGQTTGEKTGDTQGYSEDIQRIYRRQKRREEKREIYGSSLAASSRRPGSITTTTTTTTTTLRPPSLQPLRPLQREDRKKRRREMHSVRQACRPKHQVLVLKCYPRFQKGVQVVRPNSSELSYLLHYASTRRSKLLKVGAFLEKRAARDVWRQKLGNVQVTMQLLAALIEKLPRDLPLYASSVLAILDTVLQHSNDIAMVEETIPTFQVFCSHQDATALSADIDYINQYRDVVRKYASFTSRTTTTTTNTTTTSTATDLRWRNVGLQAIRAVVGSEALGADWSRQLNIVLPVILHTLYHSGDPGLLQLQQRAVCSENLEKEHARRRRMSIATVQTVDTVEAGDPESASGTAADADKAAEVEAQVLAFRCLEKVFTPGSNRLQIRLATALVLEFIVSRNPPRPKNDTSWATDLLEVIVNWAPVQDRFVVLVTLVEALAERPLVDGQLEPQLGLVYMIEWLLSSSINLIGLSVMDVLIALLRFIVLLLHLGEGRVKVVPPPSKTAFAHPLALAHTDDAALPASTTATAATTTGSAEEGGTATNSRPSSGSMRQELLVLLQSSVANLANHVYYTDQVSDMVKTIVSRIRPASAPASSTNNSDHDESERAAADESSSVVSDTYFSTPNARIIALKAVKDTLDVANRPGAGSSSSRAGGGGGGGTHARHPVPVHAWEGTQWLLRDADRDVKYAYVDALLCWLKLETNDSDLRAPAEPLKVGKRKDRGADLSDSAEKLVRKALPASGPDDNNKVAAAEVSRFLQHLHFNIYEIATDPAVSEADILLSHLLLVSLVDRLGVNAIRYGLPVIMKLQSYCLDPSTPASPLKAGSLVHGYLSAVVERFTLEGTKLGRDILNEVVRRKKNGLWLTKVQLPPLPAARILAEQPLNPSDTNTGPVVQPNKSAYTPFTSIAELVSQIETAYNQSCLSPASSPASSPGAAVQGLAATLSFQPPARHLPTTTLLPSYIKDQMLSSWSREACLASIEQERTRSSSITGSKSGSVPVRNHLNVTATAGKNGTASSPTGTDSSHGHGQKWHRPVSASAAAAVATTATAPGTRAESRKDRRQSLTEIPHPRSSTTASSSKDSTVRVNELRRVLSVMNTSNVRHPSPLRGHPPLCSDDASSAESMVTDTFSTSDAGFSSTGPAGNADAVLEKVQQTHAPQLDKDKDNKSTPPVPPLPHHPQSRKQPSRSSSACQSRSNSRSRPRSKTRTPSTSRRAASPQTSTTRSRKHSRSAAENPVDAWDPSLTQNPILLRSVSQSRRAEVDKLLGGIATPTPTTPDADTVVPMPPHDGVKGLLAPSRSISGRRGIGPPPY
Length1639
PositionMiddle
OrganismArthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) (Trichophyton mentagrophytes)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Eurotiomycetidae> Onygenales> Arthrodermataceae> Trichophyton.
Aromaticity0.05
Grand average of hydropathy-0.373
Instability index59.44
Isoelectric point9.61
Molecular weight178536.16
Publications
PubMed=21247460

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
protein localization to plasma membrane	GO:0072659	IEA:InterPro
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26149
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     136.90|      44|      57|     110|     166|       1
---------------------------------------------------------------------------
  110-  157 (67.99/57.01)	LLYQ...PSSPSPSLTL...LLLYCPlSLLTTTDCPSSLSvllLLLTLSITLSL
  168-  217 (68.91/31.83)	LLQQrrlPQSTLQSLSLyhyLLFHCS.TVSMNPPAPSSPR...FTLELEFVLSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     243.29|      54|      58|    1297|    1350|       3
---------------------------------------------------------------------------
 1297- 1350 (92.62/52.90)	WSREACLASIEQERTRSSSITGSKSGS..VPV...R......NHLNVTATAGK..NG.......TASSP....TGTDS
 1358- 1383 (26.59/ 8.81)	WHRP..........................................VSASAAAavAT.......TATAP...gTRAES
 1385- 1457 (59.54/30.82)	KDRRQSLTEIPHPRS.STTASSSKDST..VRVnelRrvlsvmNTSNVRHPSPL..RGhpplcsdDASSAesmvTDTFS
 1499- 1549 (64.54/34.16)	VPPLPHHPQSRKQPSRSSSACQSRSNSrsRP....R......SK...TRTPST..SR.......RAASP...qTST..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.97|      13|      54|     220|     237|       4
---------------------------------------------------------------------------
  220-  237 (17.37/24.72)	PHYLSHLavAHPqllGIT
  277-  289 (26.61/16.60)	PEYVQFL..SHP...GAT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      88.06|      23|     185|    1065|    1087|       5
---------------------------------------------------------------------------
 1049- 1067 (26.19/14.34)	GADLSD..SAEKLVR..KALPAS
 1068- 1090 (38.51/24.83)	GPDDNNKVAAAEVSRFLQHLHFN
 1091- 1110 (23.36/11.94)	IYEIATDPAVSEADILLSHL...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     145.32|      49|     185|     615|     680|       6
---------------------------------------------------------------------------
  587-  638 (76.22/56.89)	RWRNVGLQAIRAVVGSEAlGADWSRQ.........lnIVLPVI.LHTLYHSGDPGLLQLQQR
  651-  711 (69.10/39.38)	RRRRMSIATVQTVDTVEA.GDPESASgtaadadkaaeVEAQVLaFRCLEKVFTPGSNRLQIR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.13|      26|      67|     846|     873|       8
---------------------------------------------------------------------------
  846-  873 (38.93/30.75)	PASttATAATTTGSAEEGGTATNSRPSS
  914-  939 (44.20/28.28)	PAS..APASSTNNSDHDESERAAADESS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.29|      11|      15|      39|      52|       9
---------------------------------------------------------------------------
   39-   49 (19.43/ 8.65)	AGEGERRGKDA
  979-  989 (21.86/ 6.65)	AGGGGGGGTHA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     138.84|      49|     282|     468|     519|      10
---------------------------------------------------------------------------
  457-  508 (74.68/50.80)	TRRSKLLKVGAFLEKRAardVWRQKLGNVQV.....TMQLLAALIEKLP..RD.LPLYAS
  509-  565 (64.16/36.52)	SVLAILDTVLQHSNDIA...MVEETIPTFQVfcshqDATALSADIDYINqyRDvVRKYAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.49|      15|      17|      60|      74|      11
---------------------------------------------------------------------------
   60-   74 (25.49/17.95)	DDGQSKRAKEKRISE
   77-   91 (26.00/18.46)	DDEEEKMKKKKRRRE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.41|      17|      17|    1148|    1164|      12
---------------------------------------------------------------------------
 1148- 1164 (27.63/20.41)	LKAGSLVHGYLSAVVER
 1167- 1183 (27.78/20.56)	LEGTKLGRDILNEVVRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.92|      11|      19|    1003|    1013|      13
---------------------------------------------------------------------------
 1003- 1013 (20.64/13.27)	WL.LRDADRDVK
 1023- 1034 (16.28/ 8.73)	WLkLETNDSDLR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.53|      25|     514|     293|     326|      15
---------------------------------------------------------------------------
  293-  319 (36.89/41.31)	LRLLQEEAFRvaVIRPQAR...KRT..TSQLA
  340-  369 (33.64/14.50)	TQGYSEDIQR..IYRRQKRreeKREiyGSSLA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.54|      14|     281|    1190|    1212|      18
---------------------------------------------------------------------------
 1196- 1212 (22.43/22.09)	PPlpaARILAEQPLNPS
 1274- 1287 (28.11/ 7.47)	PP...ARHLPTTTLLPS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26149 with Med31 domain of Kingdom Fungi
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