<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26105

Description Uncharacterized protein
SequenceMVIDSMLSTTTNNSSSSSSNNSNNSSSNENGNSYINHIHSVTVESWRTRESPVKWSKKLLDFFKVSNNNNNNIGSGGGRGGGDQSMSYGRIICDLLLKQMMVGPSPSPLLVSYLRYALAMQMINYTDFFNSMTELSTNTLISKKPKQFNTILSVLVDVVKILELKATSERYIHLEKTHSQSSHIVQESIGQHLGVNGTATTTTTTTTGEKKSTKKKDLVANGVVMLNGKHGHQNGKSIASYDMLLDGSSKRKRNNNNNISGDNDSNNDIDEDNDIITNNNDDDEDDNNNNDNDIKMDGDQLTTTTTTTTSSSPTMMDEDLQYLKKRKNQLNTFQTIYDTNSSDSTEAATTTTTTTTTTTTSKPKSTTSGAAATTTTTLDTNRDIVSKSSYIMQLTSIVKLVVLLLQSVVSALDEEMKEGGEQQQQQQQTQKSKQLNDNALECMEILSNMIGNNKLASFLLDSKQEVPVVFSELTTWLENLKNKLGAPIDENAMVVDDNNNNNNNNTSLKRLIQQRYSMLLTTLHDTLFIPFLPINESQALIQPNNNNNNNNNNNNNNNQNEQNNNNNGINYNINQLSTTVGEIDINQSLSLQLLFEEEITGCVLNNSVLDNLFKFDWIRSVRSIHATNYLFELLRIAFQRLTTCDPMTNEYRKVKMFILVKIPLFYSKLLSLNNSSNNNNQNSNNISIEDALLQITQITSLYDMLSYNENIPLCLLQTLIKQNLVSITVSKEKLPIFNSNGELDQLELELQQANAQKTVDDISMDFHIQSLSDIGLVRESLFSLNENSEIYDIQTLMSVLRTHLIAPFDFQENLMALLFERMDTLADPLENKKVLSHLFSILSDPLILETIDVHGYSLKLMIHLIRYCDAIGTITNNEHGGIFIHSYFALPFSILSTLIILYNLKGNKYNLDQLYNQMKQKDNQDLSYQNPFIRWIFDSFKDTEINFGNNYKEGTNSEDYQILKTLVEMNRETFSFQILNEYSPWKLSHLLPQLLFLLFNCLEKNLISSDAIVEIISMVIDIVPYASIIILQYLAKNPNTIPIELILGCFMNADGSDRENAHIINLSIDNTNIQIYHYILETLNLILFPILYKFPFQSNPNHSILFNQVINAHQNTPIHSQLSSPQSIINELFEGFKTKFSEIPKDLLINIISKTDIIQFIQFTSKKVLSAISTTNDLDQNSIIHTIRAIELGGFIIGNLVGIEAIPILFNSFVPSFFNSLINTPYKAQYLAYFCQNVFIHSNCQFYIQINDQFIKKAMTSFFQLLSDSAKRLLPDNDPQHAFVLSMISQFIHMNKSLNLISVGNNNNNNNKDKQQKISVFSILSMDKIDQLSKSITYISNYFMAASIYEYRDDHHLYNNNINNN
Length1365
PositionTail
OrganismPolysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) (Heterostelium pallidum)
KingdomAmoebozoa
LineageEukaryota> Amoebozoa> Evosea> Eumycetozoa> Dictyostelia> Acytosteliales> Acytosteliaceae> Heterostelium.
Aromaticity0.08
Grand average of hydropathy-0.329
Instability index37.20
Isoelectric point5.21
Molecular weight154548.47
Publications
PubMed=21757610

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26105
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      63.51|      12|      52|     302|     313|       2
---------------------------------------------------------------------------
  200-  210 (16.39/ 9.20)	.TTTTTTTTGEK
  302-  313 (23.19/16.53)	TTTTTTTTSSSP
  352-  363 (23.92/17.33)	TTTTTTTTTSKP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     461.58|     136|     179|     497|     673|       3
---------------------------------------------------------------------------
  465-  543 ( 2.28/15.44)	..................................................................................................................EVPV.VFSELttwlenlknklgapidenaMVVDDNNNNNNNNTSLKRLIQQRysmLLTTLHdtlfipflpinesQALIQP
  562-  680 (165.47/98.93)	QNNNNNGINYNINQlsttVgeiDINQSLSLQ..LLFE..EEITGCVLNNSVLDNLFKF..DWIRSVRSIHATNYLFELLRIAFQRLT...TCDPM....TNEYRKVKMFI..LVKIPL.FYSKL...................LSLNNSSNNNN........................................
  681-  807 (173.91/92.01)	QNSNNISIEDALLQ.........ITQITSLYdmLSYN..ENIPLCLLQTLIKQNLVSI..TVSKEKLPIFNSNGELDQLELELQQANaqkTVDDI....SMDF...HIQS..LSDIGL.VRESL...................FSLNENSEIYDIQT............LMSVLR.............THLIAP
  808-  921 (119.91/57.42)	..................F...DFQENL.MA..LLFErmDTLADPLENKKVLSHLFSIlsDPL.ILETIDVHGYSLKLM.IHLIRY.....CDAIgtitNNEHGGI..FIhsYFALPFsILSTL...................IILYNLKGNKYNLDQLYNQMKQK............................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     140.86|      43|      52|    1223|    1273|       4
---------------------------------------------------------------------------
 1223- 1267 (76.22/60.85)	NTPYKAQYLAYFCQnvFIHSNCQF.YIQI.....NDQFIKKAMTSFFQLLS
 1277- 1325 (64.64/34.40)	NDPQHAFVLSMISQ..FIHMNKSLnLISVgnnnnNNNKDKQQKISVFSILS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     214.41|      45|      45|    1070|    1114|       5
---------------------------------------------------------------------------
 1025- 1069 (49.30/24.98)	YAS....IIILQYLAKNPNTI.....PIELILGCFMNADGSdrenaHIIN................LSI...D
 1070- 1114 (78.76/44.40)	NTN....IQIYHYILETLNLI...LFPILYKFPFQSNPNHS.....ILFN................QVINAHQ
 1115- 1173 (43.61/21.23)	NTP......I.HSQLSSPQSIineLFE.GFKTKFSEIPKD......LLINiisktdiiqfiqftskKVLSAIS
 1174- 1214 (42.73/20.65)	TTNdldqNSIIHTI.RAIELG...GFIIGNLVGIEAIP........ILFN................SFV....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     106.06|      21|      23|     254|     274|       6
---------------------------------------------------------------------------
   12-   32 (32.09/14.38)	NNSSSSSSNNSNN.SSSNENGN
  254-  274 (40.07/20.23)	NNNNNISGDNDSN.NDIDEDND
  278-  299 (33.90/15.71)	NNNDDDEDDNNNNdNDIKMDGD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26105 with Med24 domain of Kingdom Amoebozoa
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