<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26102

Description Putative mediator complex subunit 27
SequenceMTENSNIFISFCSTHQKECELICFDCNVLFCSRCLNAHKNHNSEHIHNITEELLNIFNDENNFNQNTSCLLKTKLNSSWLTLKKLSSRYHSLEVKRKDVVDLFDGLIKSLVLQQHKVAKPIVDDQDKIKKQIGDLFSEIKSLITIINFNNNKDNKYNNNNKNSNNNNNNNRENMTFQFMEQASNEHIEMLLHSINEYESLYSFVNNNKELFSISNNEEKDDDHGDDDMRWDHQNQYQQQQSNTSINNDSFYHILLDLIYKFNKKYNVIQLKEQQVQFLESLRTTNSYNTQQDGSMTLIDLTDSTNVSMETINTSWSGGFHLTYNSIVKVDSHVYIFGNYNGDRQNKYCRLSMKSKTIDHQSDIKNIEFGRTMSVCYDGQDYIYLVNGYNDDSFTSLKRIDRFHVKTQCFERYHQLECEDSIHIHSFFFNGLLYSLPIKERKIYIFDPIKKKAEVIIDDHLKSYTMAATNDEKGNIFILSIDNKLVRYNIPSKKFYPLCSIKQIENEQSMVYHQVSNSESYIYLFGGKDHGNYRYSIANNHWELFFEDDKFVRSFCGSNTKVILLSNSIFQQQMSNPNYNIGHQQQQQQQQLVHPQQQQLHQQQIQQQQIQQQQLQQQLQQQQQHQQQQQQHQLQQQQQQLQQQQQQQLQLQQQQQQQLQQQQQHLQNRNITSTPNTTTTTATNIPTAATTTTTISTPTSSASSSTSIQQQPLSIIPPKEETHKLPTVQQKHILEQYDEIIEQIGFLRVNVDQIFSTIIEEAKQSVNNQSMPIINPSISREAKQQVLVQALTTIKQSLKKIEVQQQQLAPYSFFPHTSSFQPIEQLWAQHTGIYDQLNIKVQNQIKLEYFWRHETAKKSTFALNLLESKLNEKYPTLLRSSHVDSNTMKKRKQIIDEKLPLSSTSTSTTNTVTSISTSTTSSPILRSKSASLSPILKSTTSLDTYSNIDSIIQSAKQETALEIHKIQSHPYKDVSKGLFVIFSDVFKCLISFAMSEESSECYRIDRIAFFGIKEKFDSFWDTSKFNIFRKISENSYEAISYYTSNTGGTSILKNILNWIWSFRGLFVEECKGCQNILQLDSSMFMYLPPSYRTFDGTFTPYHPICYHTHSHQQQQQQK
Length1117
PositionTail
OrganismPolysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) (Heterostelium pallidum)
KingdomAmoebozoa
LineageEukaryota> Amoebozoa> Evosea> Eumycetozoa> Dictyostelia> Acytosteliales> Acytosteliaceae> Heterostelium.
Aromaticity0.10
Grand average of hydropathy-0.712
Instability index59.19
Isoelectric point6.67
Molecular weight130317.28
Publications
PubMed=21757610

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
zinc ion binding	GO:0008270	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26102
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     186.78|      23|      23|     619|     641|       1
---------------------------------------------------------------------------
  570-  592 (43.77/14.17)	QQQMSNP.NYNIGHQQQQQQQQLV
  595-  617 (46.21/15.32)	QQQQLHQ.QQIQQQQIQQQQLQQQ
  619-  641 (52.48/18.25)	QQQQQHQ.QQQQQHQLQQQQQQLQ
  643-  666 (44.32/14.43)	QQQQQLQlQQQQQQQLQQQQQHLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     140.60|      35|      35|     899|     933|       2
---------------------------------------------------------------------------
  685-  716 (53.27/34.31)	PTAATTTTTISTPTS...SASSSTSIQQQPLSIIP
  899-  933 (56.32/36.74)	PLSSTSTSTTNTVTSISTSTTSSPILRSKSASLSP
  936-  960 (31.01/16.51)	K.STTSLDTYSNIDSIIQSAKQETAL.........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.99|      23|      36|     791|     815|       3
---------------------------------------------------------------------------
  791-  815 (33.56/23.38)	TTIKQSLkKIEVQQQQLAPYsFFPH
  830-  852 (41.43/20.82)	TGIYDQL.NIKVQNQIKLEY.FWRH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     214.33|      53|      53|     148|     200|       4
---------------------------------------------------------------------------
   40-   92 (59.94/30.82)	NHNSE..HIHNITEELLNIfNDENN.......FNQNTScllktklNSSW......LTLKKLSSRY.................HSL......
  149-  203 (88.79/49.65)	NNNKD..NKYNNNNKNSNN.NNNNNRENMTFQFMEQAS.......NEHI......EMLLHSINEY.................ESL...ysF
  205-  287 (65.60/34.51)	NNNKElfSISNNEEKDDDH.GDDDMRWDHQNQYQQQQS.......NTSInndsfyHILLDLIYKFnkkynviqlkeqqvqflESLrttnsY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     329.45|      73|     136|     320|     393|       5
---------------------------------------------------------------------------
  320-  392 (133.34/82.43)	HL......TYNSIVKVDS.HVYIFGNYNGDRQNKYCRLSMKSKTIDH.....QSDI.KNIEFGRTMSVCYDGQDYIYLVNGYNDDS
  403-  472 (86.76/49.20)	HVktqcfeRYHQLECEDSiHIHSF.FFNGLLYS....LPIKERKIYI.....FDPIkKKAE......VIIDDHLKSYTMAATNDEK
  474-  509 (37.45/18.03)	.....................NIF.ILSID..NKLVRYNIPSKKFYP.....LCSI.KQIENEQSM....................
  512-  566 (71.89/39.37)	HQ......VSNS....ES.YIYLFG...GKDHGNY.RYSIAN...NHwelffEDD.....KFVR..SFCGSNTKVILLSN......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.56|      18|      19|     748|     765|       6
---------------------------------------------------------------------------
  748-  765 (29.16/19.09)	VNVDQIFSTIIEEAKQSV
  768-  785 (31.40/21.16)	QSMPIINPSISREAKQQV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     115.95|      34|      35|     965|     999|       7
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  965-  999 (55.19/43.88)	IQSHPYKDVsKGLFVIFSDVFKCLISFAMSEESSE
 1003- 1036 (60.76/43.49)	IDRIAFFGI.KEKFDSFWDTSKFNIFRKISENSYE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26102 with Med27 domain of Kingdom Amoebozoa
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