<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26099

Description Predicted protein
SequenceMASHESADDVIEKVDEMIDLISKFRSSVHTIFTELNPHNRTLVSHQVSVPNIIKEENPEASHSEPTPYRTHISSCFQHASSYLAKLKDYQKVNLTSSKYSGLKTILNGSVDRQGVDKLKSKVDSTLQTLSKEIEKKRYVREDPGDLELFETPRKERMKTSPNSVIHKISKRDESSYKDPQELLSELKDKSGKFHNYFSIVDLLSIHKDDNHCSVFLRVTDIMIVNILFRDNMTPYEANAFSIHENVYETSISEHKIFRQVSKTFCQALDFYTTHPVYKAIPFQAFMIYLCLYRKLFMDKCSHKNCNCIMSPPHIMDLPYFRDFETGIAYHIQHIPVNRRVDLNLPFTSEYKQKEIKKNTETPSMNTPMSTSNQTPQVNEL
Length380
PositionTail
OrganismNaegleria gruberi (Amoeba)
KingdomHeterolobosea
LineageEukaryota> Discoba> Heterolobosea> Tetramitia> Eutetramitia> Vahlkampfiidae> Naegleria.
Aromaticity0.09
Grand average of hydropathy-0.589
Instability index43.00
Isoelectric point7.29
Molecular weight44086.65
Publications
PubMed=20211133

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26099
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.71|      15|      20|      27|      45|       1
---------------------------------------------------------------------------
   27-   45 (23.09/22.43)	SVHTIFTELNPHnrtlVSH
   48-   62 (27.62/15.77)	SVPNIIKEENPE....ASH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.28|      13|      17|     176|     188|       2
---------------------------------------------------------------------------
  176-  188 (23.10/16.25)	YKDPQELLSELKD
  196-  208 (23.18/16.32)	YFSIVDLLSIHKD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.98|      19|      20|     327|     346|       3
---------------------------------------------------------------------------
  328-  346 (34.95/23.55)	AYHIQHIPVNRRV.DLNLPF
  349-  368 (28.03/12.88)	EYKQKEIKKNTETpSMNTPM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.12|      17|      21|      88|     106|       4
---------------------------------------------------------------------------
   88-  104 (29.80/24.58)	DYQKVNLTSSKY.SGLKT
  111-  128 (24.32/11.78)	DRQGVDKLKSKVdSTLQT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.83|      13|      17|     256|     271|       5
---------------------------------------------------------------------------
  256-  271 (14.36/23.62)	IFRQVSktFcQALDFY
  276-  288 (24.47/17.93)	VYKAIP..F.QAFMIY
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26099 with Med27 domain of Kingdom Heterolobosea
Unable to open file!