<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26042

Description Predicted protein
SequenceMATTAAAAATTTTSLALPMATDTPASAPAPAASAAPPPPAAAAAATDTHLQQQQQQQQQQQQQQQQQQQQQPPAPARNFKAADLPLPSATRAAIESLAHSFKKKGGYDAMRKEIWDKFEASDYQAQVTKEILHVAEARALAVRHGVRPESIFGRGQTRRDASQSATPKPTDAKDERPASRGQSKTVARDDTEKDRDRDRDRDGGRDRDRERDTRRQDSSRQRSRHEYDRRRRDRSRSRDRTDRRDRSRSRRRERSRSRSRFDRRDRRSRSRTRRSRSRSRSRSRSRPRRDRTRSRSRARYDRRDRDRSRSRSRRDRSRSRPRRDRDRRSRSRSRPRRDRYRSRSPRRDRSPPPPPRHNPPPYRNTDPPGDRASHTKMDEVRKREKEAKAYLAAQREAREKGMPIPGIDDKRASGAGVSAADDMRSPDAKRKRDLEEIDRYVPPGRDRERPHDMPVKRDDRDRDRDRDRDRDRDRDRRPESQPQPLER
Length487
PositionTail
OrganismVerticillium alfalfae (strain VaMs.102 / ATCC MYA-4576 / FGSC 10136) (Verticillium wilt of alfalfa) (Verticillium albo-atrum)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Glomerellales> Plectosphaerellaceae> Verticillium.
Aromaticity0.03
Grand average of hydropathy-1.926
Instability index105.44
Isoelectric point11.56
Molecular weight57092.97
Publications
PubMed=21829347

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26042
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     386.62|      47|      47|     263|     309|       1
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  154-  206 (56.25/11.10)	RGQTRRDASQSATPKPTDA.....KDERPASRGQsktvARDDtEKD...........RDRDR..dRDGGRD
  207-  245 (58.95/12.16)	RDRERDTR................RQDSSRQRSR....HEYD.RRR...........RDRSRsrdRTDRRD
  246-  268 (44.53/ 6.49)	RSRSRR...................RER..SRSR....SRFD.RR......................DRRS
  269-  317 (85.48/22.61)	RSRTRRSRSRSRSRSRSRP.....RRDRTRSRSR....ARYD.RRD...........RDRSRsrsRRD.RS
  318-  373 (74.26/18.19)	RSRPRRDRDR.RSRSRSRP.....RRDRYRSRSP....RR.D.RSPpppprhnpppyRNTDP...PGDRAS
  432-  478 (67.15/15.39)	RDLEEIDRYVPPGRDRERPhdmpvKRD.DRDRDR.......D..RD...........RDRDR...DRDRRP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     120.08|      38|     314|      74|     112|       2
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   37-   83 (57.77/23.50)	PPPAAAAAATDTHLQQQQQQQQQQQQQQqqqqqqqppAPARNFKAAD
   85-  122 (62.32/29.37)	PLPSATRAAIESLAHSFKKKGGYDAMRK.........EIWDKFEASD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26042 with Med15 domain of Kingdom Fungi
Unable to open file!