<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26034

Description Mediator of RNA polymerase II transcription subunit 17
SequenceMANNPTQSPYTSLRPPPIGSRKPKNLGEFIGRIQAERGFRNVTEASLREEVAAKTNGEAKEDDIQMSVTDDEDVEEAKDIHTVKGEIMRNIDAAHNTAMVALDFVSLLLTKHNPNQAGVTLSQALRDFAGIGTLGVSKFKDSEQAGDKRRREEKRQEAKEVSQGWTLMEIERTKKAAEKSAAMLAKEVDREEKYWSEILAVKQNGWSMCRLPAERHTLGVRFGFTEASSEFRNNSLAPLRRGDDGSVVLEQGRAGVGCQRISVTLARDGEISGQSTTSSSILESAPLQERVLEARNTIFSQELWHELHREAHSLASYGVRASDSSITYEPKTGPSINISLDTLLGVAPTAQETKPDTWYAEVTQLSLHVLLSYAHRENEVQRRRPGPPHQRRHEQHNQYHLIRPILSRAIHDVSVRQCTRLVGDLVRILRQSGIEEAAFTLNNPQFVLPNSDALTSTSSNRPTAAQALVNLLLAPSDFQLDVTLTPRARIQIRGRTWFLPLTTTQYQVHLLPPLDSTDATQNSLLTSCPPYRERDGYPDLQSLKVYLLTAIPRALADLYLPLAESLGSNPSQATTEPAAETSDPIWVKSVRGNAIQDSTRDAREIAFELDEKSNADGSERLTLKASGIWCEGSEARTKFEHFDGVPGGEGQASPAKIKIKDIIEAVVTATEAV
Length673
PositionHead
OrganismVerticillium alfalfae (strain VaMs.102 / ATCC MYA-4576 / FGSC 10136) (Verticillium wilt of alfalfa) (Verticillium albo-atrum)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Glomerellales> Plectosphaerellaceae> Verticillium.
Aromaticity0.05
Grand average of hydropathy-0.520
Instability index45.74
Isoelectric point5.90
Molecular weight74441.57
Publications
PubMed=21829347

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26034
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     174.12|      55|     139|     334|     392|       1
---------------------------------------------------------------------------
  334-  392 (86.01/62.55)	PSiNISLDTLLgvAPTAQ.ETKPDTWYAEV..TQLSLHvLLSYAHRENEVQRR..RPGPPHQRR
  475-  534 (88.11/50.56)	PS.DFQLDVTL..TPRARiQIRGRTWFLPLttTQYQVH.LLPPLDSTDATQNSllTSCPPYRER
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.62|      17|      38|     151|     167|       2
---------------------------------------------------------------------------
  151-  167 (31.29/19.44)	REEK.RQEAKEVSQ.GWTL
  190-  208 (24.33/13.62)	REEKyWSEILAVKQnGWSM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.47|      20|      40|     248|     268|       3
---------------------------------------------------------------------------
  248-  268 (29.60/24.24)	VLEqGRAGVGCQRISVTLARD
  291-  310 (35.87/24.29)	VLE.ARNTIFSQELWHELHRE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26034 with Med17 domain of Kingdom Fungi
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