<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26032

Description Meiotic mRNA stability protein kinase SSN3
SequenceMWRGVGYGGLHSSYPTDRGTGHVAYQSKVRVIERYKVIGFISSGTYGRVYKAVGRQGQKGEFAIKKFKPDKEGEQISYTGISQSAIREMSLCSELKHPNVIRLVEIILEDKCIFMVFEYAEHDLLQIIHHHTQQPRHPIPSQTVKSIMFQLLNGCQYIHSNWVLHRDLKPANIMVTSAGEVKVGDLGLARRFDKPLHSLFSGDKVVVTIWYRAPELILGSRHYTPAIDMWAVGCIFAELLSLRPIFKGEEAKMDSKKTVPFQRNQMQKIVDIMGLPTKERWPLLSSMPEYAQLATLQPPMSSAHHHHRSHHQSLPQGSNLEKWYWSTVSQGAASNASQASQSSGPLVSLGVEGFKLLSSLLEYDPLERLTAAKALQHPFFSTGDRLTAGAFEGLKNEYPHRRVSQDDNDIRTGSLPGTKRSGLPDDSLRPSKRAKE
Length436
PositionKinase
OrganismVerticillium alfalfae (strain VaMs.102 / ATCC MYA-4576 / FGSC 10136) (Verticillium wilt of alfalfa) (Verticillium albo-atrum)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Glomerellales> Plectosphaerellaceae> Verticillium.
Aromaticity0.08
Grand average of hydropathy-0.417
Instability index40.66
Isoelectric point9.37
Molecular weight49008.50
Publications
PubMed=21829347

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26032
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     173.20|      51|      72|     279|     330|       1
---------------------------------------------------------------------------
  279-  330 (94.20/81.63)	ERWPLLSSMPEYAQLATLQPPmSSAHHHHRSHHQSLPQGS..NLEKWY.WSTVSQ
  352-  405 (79.00/62.03)	EGFKLLSSLLEYDPLERLTAA.KALQHPFFSTGDRLTAGAfeGLKNEYpHRRVSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.46|      21|      33|     164|     184|       5
---------------------------------------------------------------------------
  164-  184 (35.64/21.11)	LHRDLKPANIMVT...SAGEVKVG
  196-  219 (29.82/16.74)	LHSLFSGDKVVVTiwyRAPELILG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26032 with CDK8 domain of Kingdom Fungi
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