Description | Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MDSRTAAQGALRATIDFWKKFVSRCIARRVDTDRFEVLVQQVYAEHPLPPAVIADFFLRPQPSNDNSLDPRIPPYLQALTRLGYIDTPSVLQALYKYSSSHAQAQQPNDGDDKNEAAQPPRTPHIKHWKSSYWAEEAIFYSLTKAVVEGRAIPDSTIALDVVKIISKYMTLFTAASTAFAADMLGQLHSPQIRDEMESARAGLVALLLRLCENDVLVKAVSKPFAKDARKELAASLASFVPTLQLVPELTEKLELFRTETLASLDPADKKKQVANAAMDELLDSTVGLENFVIPEIPISNTRAGLYIYLNAALIGRPILDDNALFSYMNNKYQGDVQSSAIDLILASFDILANAVFRNEGQKDAHLLRSYLINKLPLLLYQLCPPEFPGTSAEFCITEALHHVDTSLFPTASLMFDESRNNNPYTESVREEFCASCVLHGLVQRDHVERILGEISLSDEPSLQKYSKEKLVQDCLSDMDKIQGLILELDKMDGNVGAVCQALIELLRQYCHSKETMSLKLLCSQLAAKPQSLDVILLFEKLPTILEPLCQLLDNWRYEEDQGEYQPVYEEFGSILLLVLAFAYRYNLTATDAGAIGPDSCVAKIIGRGHIARQGNELTEQENGHLGGWIHGLFDTEAGGLGDELMSSCPPQEFYLLVATLFQNIVVAYAHGYLNDESLKGGVEYLVDTFLLPSLVPAIRFLSDYLWVDQKEAKSVIKVLQLILLPSSISGEASTMLSSVKNLIARPLEHALRTYQRRDPKNQDIEPLLRTLKDSIPLSRRTGGADINELESWTSTATNGLASAIKHNIQGLVHWSMHPAINSMPTSYTHRQMLAALKLLGSKRLLHIILDEVRQQTEAGNANSVYDVATSLICAPDAAKDAPVGMLDVNGNMPPTLQRPRTLREMLKAEAEGCKKLQKKDAALAEIVVRLHRRVEMLMVMPEAQAMLQTADMALGDAMAAAASGVQGDSMSVDNMLDVGMGGVPSDLGLGPASAGGSLDPSGDNELFGAFGSQELDNFDWDMDNMV |
Length | 1026 |
Position | Tail |
Organism | Nectria haematococca (strain 77-13-4 / ATCC MYA-4622 / FGSC 9596 / MPVI) (Fusarium solani subsp. pisi) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Hypocreales> Nectriaceae> Fusarium> Fusarium solani species complex> Fusarium vanettenii. |
Aromaticity | 0.07 |
Grand average of hydropathy | -0.099 |
Instability index | 43.46 |
Isoelectric point | 5.02 |
Molecular weight | 113109.11 |
Publications | PubMed=19714214 |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP26006 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 71.69| 23| 30| 614| 643| 1 --------------------------------------------------------------------------- 618- 643 (36.68/36.50) TEQENGHLggwIHGLFDT.....EAGGLGDE 649- 676 (35.01/15.15) PPQEFYLL...VATLFQNivvayAHGYLNDE --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 89.87| 27| 29| 538| 566| 2 --------------------------------------------------------------------------- 538- 566 (47.19/40.05) FEKLPTILepLCQLLDNWRYE...EDQGEYQP 568- 597 (42.68/28.41) YEEFGSIL..LLVLAFAYRYNltaTDAGAIGP --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 61.32| 18| 19| 297| 315| 3 --------------------------------------------------------------------------- 297- 315 (27.13/25.94) PISNTRAgLYIYLNAALIG 317- 334 (34.19/26.38) PILDDNA.LFSYMNNKYQG --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 54.91| 18| 19| 948| 965| 4 --------------------------------------------------------------------------- 948- 965 (28.85/16.20) QTADMALGDAMAAAASGV 966- 983 (26.07/13.94) QGDSMSVDNMLDVGMGGV --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 47.93| 16| 19| 786| 804| 5 --------------------------------------------------------------------------- 786- 801 (28.90/30.63) INELESW..........TS.TATNGLA 808- 834 (19.03/ 7.20) IQGLVHWsmhpainsmpTSyTHRQMLA --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 145.15| 39| 136| 205| 265| 7 --------------------------------------------------------------------------- 205- 243 (61.91/34.43) ALLLRLCENDVLVKAVSK...PFA.KDARKELAAS..LASFVPTL 340- 378 (53.13/26.67) AIDLILASFDILANAVFR...NEGqKDA.HLLRSY..LINKLPLL 406- 442 (30.11/48.42) ....SLFPTASLMFDESRnnnPYT.ESVREEFCAScvLHGLV... --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 42.72| 15| 29| 735| 753| 8 --------------------------------------------------------------------------- 735- 753 (17.09/19.99) MLSSVKNLIarPLEHalRT 767- 781 (25.63/13.94) LLRTLKDSI..PLSR..RT --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 37.28| 11| 15| 677| 687| 9 --------------------------------------------------------------------------- 677- 687 (18.64/10.19) SLKGGVEYLVD 693- 703 (18.63/10.18) SLVPAIRFLSD --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) LQALTRLG 2) QELDNFDWDMDNMV 3) VIADFFLR | 76 1013 52 | 83 1026 59 |
© 2021 Shailesh Lab
Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab