<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25969

Description Uncharacterized protein
SequenceMEGSSSSPPDGDGGSLGFQFLQVAVAVRGDGRASRRAARWAAATLVPAGGRVALVHVIPPVSFVPSPSGERVPVEKMEPEVVEMYAQDCRARAQEVFLPFRRLVGRGGRTVETVVLEGDSVAEALAKYAAESGVRSLVLGSATLSWFRRILRLQDVPFTVLKTVPSFCNIFVVSRRRLTIKIANQARNSKSNASIRIQSISHKAFDQIQRDWLQDKQALNNLADDEIPKYSGNSSSGSFSQVCSSLSTSSNAIKSSESHRRGFLGSLGRRTPGRERNKDFDAISQLKEVHYVALSSVEEYQHIDEEEKLRKELKDTLMMYDRACGNLAHAKKKIQLLSSECCEDVNKVQDALQREKILKQSVADEKTKHLEAIGAVEMAKNAFTHETYSKHQAEILANMVSIENAKVVDALLSTGKSCRQYSKHEIELATDYFSDAKKIGEGGYGNVYRCTLDHTEVAVKVIQQDSTDKIDEFLREVEILSQLHHPNLVLLLGFCPEIGCLVYEYMENGSLEDLLINNKGQPLHWFLRFQIIFDVACGLAFLHGTKPEPIVHRDLKPGNILLDKNYVSKIGDVGFAKLISDLVPEGLTEYRDTVIAGTLYYMDPEYQLTGTIRPKSDLYALGIIILQLLTGKRPHGLLSSVEEAIKRGILSDILDKSQPDWPIAEAEMLAKLGLWCTALKCRDRPNLESEVLPELENILSRVTVSLKLENILAPSHFFCPILQEIMEDPYVAADGHTYEHRAIKAWLEKYKISPVTNQRLPHLSIIPNHSLHAAIQQWKLRAS
Length783
PositionTail
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Sorghinae> Sorghum.
Aromaticity0.07
Grand average of hydropathy-0.238
Instability index52.87
Isoelectric point6.66
Molecular weight87334.92
Publications
PubMed=19189423
PubMed=29161754

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25969
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.53|      22|      57|      30|      51|       1
---------------------------------------------------------------------------
   30-   51 (38.98/25.33)	DGRASRRAARWAAATLVPAGGR
   88-  109 (40.55/26.64)	DCRARAQEVFLPFRRLVGRGGR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     175.49|      56|      58|     304|     360|       2
---------------------------------------------------------------------------
  304-  360 (88.69/75.58)	DEEEKlRKELKDTLMMYDRACGNLAHAKKKIQLLSSECCEDVNKVQDA.LQREKILKQ
  364-  420 (86.80/68.67)	DEKTK.HLEAIGAVEMAKNAFTHETYSKHQAEILANMVSIENAKVVDAlLSTGKSCRQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      97.23|      31|      58|     125|     155|       3
---------------------------------------------------------------------------
  125-  152 (39.10/25.61)	.............................LAKYAAES.GVRSLVLGSATLSWFRRILR
  153-  210 (32.15/19.70)	LQDvpftvlktvpsfcnifvvsrrrltikIANQARNSkSNASIRIQSISHKAFDQIQR
  213-  247 (25.98/14.46)	LQD...............kqalnnladdeIPKYSGNS.SSGSFSQVCSSLS.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      68.98|      23|      24|     638|     660|       5
---------------------------------------------------------------------------
  638-  655 (19.80/ 9.76)	..........LSSVEEAIKRGILSDILD
  656-  680 (31.67/19.90)	KSQPD...wpIAEAEMLAKLGLWCTALK
  682-  705 (17.52/ 7.81)	RDRPNlesevLPELENILSRVTVS....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.02|      11|     222|     494|     508|       6
---------------------------------------------------------------------------
  494-  508 (18.25/21.87)	FCPeigcLVYEYMEN
  718-  728 (22.77/13.27)	FCP....ILQEIMED
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25969 with Med32 domain of Kingdom Viridiplantae
Unable to open file!